View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_high_8 (Length: 346)
Name: NF9616_high_8
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 38152115 - 38151824
Alignment:
| Q |
1 |
aaggacatcagttaacaaattccaggatgcacactgcatatcaaagaatttttcctgtcaacagatgaatgtagagtaaggagagttatcaaaccaataa |
100 |
Q |
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| T |
38152115 |
aaggacatcagttaacaaattccaggatgcacactgcatatcaaagaatttttcctgtcaacagatgaatgtagagtaaggagagt-atcaaaccaataa |
38152017 |
T |
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| Q |
101 |
ctttccaaaaatgtttatttcattccacctggagatctagcaatcacagtgatcagggcactttggcctaccaaaaagttaagagtgaaca-ggctattg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38152016 |
ctttccaaaaatgtttatttcattccacctggagatctagcaatcacagtgatcagggcactttggcctaccaaaaagttaagagtgaacagggctattg |
38151917 |
T |
|
| Q |
200 |
ccaatttctatcatctcaggaagaacaaattgaattgataacagaatcatatgtgtaacatctgttatctttttgttacactcaagtatgttcatttgct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
38151916 |
ccaatttctatcatctcaggaagaacaaattgaattgataacagaatcatatgtgtaacatctgttat-------ttacactcaagtatgctcatttgct |
38151824 |
T |
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