View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_low_1 (Length: 647)
Name: NF9616_low_1
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 17 - 619
Target Start/End: Original strand, 42185740 - 42186338
Alignment:
| Q |
17 |
tcattttcctctgcgtatatacttattatatttgttggtatcnnnnnnnatagcaacaatttaaatgtgtaataaatgtccaaaatatggtcttttttac |
116 |
Q |
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| T |
42185740 |
tcattttcctctgcgtatatacttattatatttgttggtatctttttttatagcaacaatttaaatgtgtaataaatgtcccaaatatggtcttttttac |
42185839 |
T |
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| Q |
117 |
ttggaaaaatttacctgttaaaagaatagtttaaattacactaatttatggaaagtgacttctgcaaataattaacatgggtcgtactttgttggaacct |
216 |
Q |
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| T |
42185840 |
ttggaaaaatttacctgttaaaagaatagtttaaattacactaatttatggaaagtgacttctgcaaataattaacatgggtcgtactttgttggaacct |
42185939 |
T |
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| Q |
217 |
agctgattttgatgtactattaaaatatataaaataagcattaagtaaacatgtatgaagtcggaagcattgtgactttgtgagtagag----tacaatc |
312 |
Q |
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| T |
42185940 |
agctgattttgatgtactattaaaatatataaaataagcattaagtaaacatgtatgaagtctgaagcattgtgactttgtgagtagagagagtacaatc |
42186039 |
T |
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| Q |
313 |
ttagcttttgctgtaacgacaaaaatcctagccatcaaacatgtgtgtgtggttggggtgaggtgaggtggtggggtttcagttatgtccatgttatgtc |
412 |
Q |
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| T |
42186040 |
ttagcttttgctgtaacgacaaaaatcctagccatcaaacatgtgtgtgtggttggggtgaggtgaggtggtggggtttcagttatgtccatgttatgtc |
42186139 |
T |
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| Q |
413 |
aaattgtatactggaggatcaatcattttcatatatatagtagaacatgtgaaatattatcttgtctccttggcaagacacattaacaaaatgttttggc |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
42186140 |
aaattgtatactggaggatcaatcattttcatatatatagtagaacatgtgaaatattatcttgtctccttggaaagacacattaacaaaatcttttggc |
42186239 |
T |
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| Q |
513 |
acatgatattctttatcttgaagtcggggaagaaggaagcagcaaaagttatcatatgatctaaatgaaagatcaagttcaatactgttacattacactc |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186240 |
acatgatattctttatcttgaagtcggggaagaaggaagcagcaaaag--------tgatctaaatgaaagatcaagttcaatactgttacattacactc |
42186331 |
T |
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