View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_low_10 (Length: 386)
Name: NF9616_low_10
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 152 - 362
Target Start/End: Original strand, 12202152 - 12202369
Alignment:
| Q |
152 |
aggcgaaagatccttatctaatgaatcat-------tcttgaattacatcgttggtatcacaaagttaaagaaatgaggacataatcaaaacgaatcaca |
244 |
Q |
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| T |
12202152 |
aggcgaaagatccttatctaatgaatcatgattcattcttgaattacatcgttggtatcacaaagttaaagaaatgaggacataatcaaaacgaatcaca |
12202251 |
T |
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| Q |
245 |
aatgtaggtgatgatactattctctccccactcaacctccttataacaaaatttcccttgcataattaattcatgttccacctctctcctctcacttttg |
344 |
Q |
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| T |
12202252 |
aatgtaggtgatgatactattctctccccactcaacctccttataacaaaatttcccttgcataattaattcatgttccatctctctcctctcacttttg |
12202351 |
T |
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| Q |
345 |
gtcacgtggatattccta |
362 |
Q |
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|||||||||||||||||| |
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| T |
12202352 |
gtcacgtggatattccta |
12202369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 12202002 - 12202116
Alignment:
| Q |
17 |
tgctccttggtgttaggggtggagttttatttattttgggttgaatttggctacaggctattttttggtacttgcacatcttgtgcgttcctatattaat |
116 |
Q |
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| T |
12202002 |
tgctccttggtgttaggggcggagttttatttattttgggttgaatttggctacaggctattttttggtacttgcacatcttgtgcgttcctatattaat |
12202101 |
T |
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| Q |
117 |
aaattcatatttttt |
131 |
Q |
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| T |
12202102 |
aaattcatatttttt |
12202116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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