View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_low_18 (Length: 338)
Name: NF9616_low_18
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 50 - 325
Target Start/End: Original strand, 4105542 - 4105817
Alignment:
| Q |
50 |
cctctaccctttacataattaccattctttttcttcaacttatgttagcctttggaaacgtttctccaagttcaagactctccaccactaacaacaacaa |
149 |
Q |
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| T |
4105542 |
cctctaccctttacataattgccattctttttcttcaacttatattagcctttggaaacgtttctccaagttcaagactctccaccactaacaacaacaa |
4105641 |
T |
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| Q |
150 |
caatccatggctatcaccttctggtgaattcgctttcggatttcggaataccacaacaaactttttcatgcttgcaatatggtacaacaacatacatgat |
249 |
Q |
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| T |
4105642 |
caatccatggctatcaccttctggtgaattcgctttcggatttcggaataccacaacaaactttttcatgcttgcaatatggtacaacaacatacatgat |
4105741 |
T |
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| Q |
250 |
caaaccattgtttggagcgccaaagacatgaacaacagcaacaacctcgtactagcaccaacaggatcacaggttc |
325 |
Q |
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| T |
4105742 |
caaaccattgtttggagcgccaaagacatgaacaacagcaacaacctcgtactagcaccaacaggatcacaggttc |
4105817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 52 - 325
Target Start/End: Original strand, 4128737 - 4129007
Alignment:
| Q |
52 |
tctaccctttacataattaccattctttttcttcaacttatgttagcctttggaaacgtttctccaagttcaagactctccaccactaacaacaacaaca |
151 |
Q |
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| T |
4128737 |
tctaccttatacataattttcattctatttcttcaacttttgttagtctttggaaacgttactcgaagttctacactatctaccacaaacaaaaa----- |
4128831 |
T |
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| Q |
152 |
atccatggctatcaccttctggtgaattcgctttcggatttcggaa------taccacaacaaactttttcatgcttgcaatatggtacaacaacataca |
245 |
Q |
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| T |
4128832 |
-ttcatggctatcaccttctggtgaatttgctttcgggtttcaacaacttggtacagcaacaaatctcttcatgcttgcaatatggtacaacaagatacc |
4128930 |
T |
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| Q |
246 |
tgatcaaaccattgtttggagcgccaaagacatgaacaacagcaacaacctcgtactagcaccaacaggatcacaggttc |
325 |
Q |
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| T |
4128931 |
tgaaaaaaccattgtttggagtgctaaaaacacgaacaa---caacaacctcgtacaagcaccgacaggatcacaagttc |
4129007 |
T |
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