View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9616_low_20 (Length: 332)
Name: NF9616_low_20
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_20 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 332
Target Start/End: Complemental strand, 26452338 - 26452027
Alignment:
| Q |
21 |
acaagcaccaacaaaatcgatgctctagttacaatacacaactaagcctctaaaaccaaaggtttgaaaaattggcaggttttttacaagaacttttctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26452338 |
acaagcaccaacaaaatcgatgctctagttacaatacacaactaagcctctaaaaccaaaggtttgaaaaattggcaggttttttacaagtacttttctt |
26452239 |
T |
|
| Q |
121 |
agatcattttcacaacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataagatttgcttcagacagtgacttacaaagcttgat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26452238 |
agatcattttcacaacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataagatttgcttcagacagtgacttacaaagcttgat |
26452139 |
T |
|
| Q |
221 |
ataaagatctaaatttccatattgctgtatccttttccttaaaccttgcataacagcaactctatccaaatactcaggatagaatcccaattcaagcatt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26452138 |
ataaagatctaaatttccatattgctgtatccttttccttaaaccttgcataacagcaactctatccaaatactcaggatagaatcccaattcaagcatt |
26452039 |
T |
|
| Q |
321 |
ttcatcacagtc |
332 |
Q |
| |
|
||||| |||||| |
|
|
| T |
26452038 |
ttcattacagtc |
26452027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University