View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_low_21 (Length: 329)
Name: NF9616_low_21
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 2431355 - 2431653
Alignment:
| Q |
17 |
agttactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431355 |
agttactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttg |
2431454 |
T |
|
| Q |
117 |
gggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattgagcacaatgatgtcccactttcctattacatcgggattctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431455 |
gggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattgagcacaatgatgtcccactttcctattacatcgggattctt |
2431554 |
T |
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| Q |
217 |
ggtatatgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttccattttgttgtgtatttttgacatatttcatgcttttgtttga |
315 |
Q |
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| T |
2431555 |
ggtatatgcgttcaacaatttcaatttatattgatattaatcgcgtagttttcttccattttgttgtgtatttttgacatatttcatgcttttgtttga |
2431653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 2434743 - 2435027
Alignment:
| Q |
20 |
tactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
2434743 |
tactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgattcagtttggag |
2434842 |
T |
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| Q |
120 |
tattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattgagcacaatgatgtcccactttcctattacatcgggattcttggt |
219 |
Q |
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| T |
2434843 |
tcttactaaatgggaagagtatagtttggttcctacaactggaattttcaaaattgagcacaatgatgtcccactttcctattataccggaattcttggt |
2434942 |
T |
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| Q |
220 |
ata-----tgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttccattttgttgtgtatttttgacatattt |
300 |
Q |
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| | | ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
2434943 |
acacgcgttccgttcaacaatttcaatttatattgatattagtcgcgcaattttcttccattttgttgtgt-tttttgacatattt |
2435027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 2428379 - 2428637
Alignment:
| Q |
20 |
tactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
119 |
Q |
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|||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2428379 |
tactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
2428478 |
T |
|
| Q |
120 |
tattactaactgggaagagtatagtttggtccctacaactggaa---tgtacaaaattgagcacaatgatgtcccactttcctattacatcgggattctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||| || || || | | |||||||||||| | ||||||||||||||||| || | || ||||| |
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| T |
2428479 |
tattactaactgggaagagtatagtttggtccctgcagctcaaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctc |
2428578 |
T |
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| Q |
217 |
ggtatatgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttccattt |
277 |
Q |
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|| |||| ||||||||||| ||||| ||| || |||||||||||||||||| |||||| |
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| T |
2428579 |
gg--tatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgccattt |
2428637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 1458672 - 1458930
Alignment:
| Q |
20 |
tactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
119 |
Q |
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|||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458672 |
tactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
1458771 |
T |
|
| Q |
120 |
tattactaactgggaagagtatagtttggtccctacaactggaa---tgtacaaaattgagcacaatgatgtcccactttcctattacatcgggattctt |
216 |
Q |
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|| ||||| |||||||||||||||||||||||| || || || | | |||||||||||| | ||||||||||||||||| || | || ||||| |
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| T |
1458772 |
aatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctc |
1458871 |
T |
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| Q |
217 |
ggtatatgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttccattt |
277 |
Q |
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|| |||| ||||||||||| ||||| ||| || |||||||||||||||||| |||||| |
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| T |
1458872 |
gg--tatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgccattt |
1458930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 2498215 - 2498062
Alignment:
| Q |
50 |
caggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggt |
149 |
Q |
| |
|
|||||||||| ||||||||||| | ||||| |||||||| ||||||||| ||| ||||||||||||||| | ||| ||||||||||| || ||||| |
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| T |
2498215 |
caggttttggggtgtctaaagtccttgaatcaggacatcctgattataaggaaggtgatttagtttggggattctgtaaatgggaagagtacagcttggt |
2498116 |
T |
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| Q |
150 |
ccctacaactggaa---tgtacaaaattgagcacaatgatgtcccactttccta |
200 |
Q |
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|||| || || || | | |||||||||||||| |||||||||||||||||| |
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| T |
2498115 |
cccttcatctcaaatacttttcaaaattgagcacactgatgtcccactttccta |
2498062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 2507165 - 2507045
Alignment:
| Q |
33 |
gtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgg |
132 |
Q |
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|||||||||||| | || |||| ||| |||||||||||||| ||||||||||| |||||||||| ||| |||| |||| ||||| || ||||| ||| |
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| T |
2507165 |
gtaattgcagccgttaactggttatggtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatatagtgtgggggataactaattgg |
2507066 |
T |
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| Q |
133 |
gaagagtatagtttggtccct |
153 |
Q |
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| T |
2507065 |
gaagagtacagcttgatccct |
2507045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 2518014 - 2517922
Alignment:
| Q |
61 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccct |
153 |
Q |
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|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| ||||||| ||||||||||| || ||| ||||| |
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| T |
2518014 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccct |
2517922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 2513825 - 2513705
Alignment:
| Q |
33 |
gtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgg |
132 |
Q |
| |
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|||||||||||| | || |||| ||| |||||||||||| ||||||||||||| ||||||||| ||| |||| | || ||||| || ||||| ||| |
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| T |
2513825 |
gtaattgcagccgataactggttatggtgtgtctaaagttctagaatctggacacaaagattataaagaaggtgatatcgtgtgggggataactaattgg |
2513726 |
T |
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| Q |
133 |
gaagagtatagtttggtccct |
153 |
Q |
| |
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|||||||| || ||| ||||| |
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| T |
2513725 |
gaagagtacagcttgatccct |
2513705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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