View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9616_low_23 (Length: 298)

Name: NF9616_low_23
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9616_low_23
NF9616_low_23
[»] chr4 (4 HSPs)
chr4 (163-278)||(41333165-41333280)
chr4 (7-127)||(41333016-41333136)
chr4 (67-127)||(10359052-10359112)
chr4 (75-111)||(10153413-10153449)
[»] chr3 (5 HSPs)
chr3 (7-127)||(9259639-9259758)
chr3 (67-127)||(30187251-30187311)
chr3 (67-127)||(646439-646499)
chr3 (67-112)||(20358056-20358101)
chr3 (67-123)||(14092715-14092771)
[»] chr8 (3 HSPs)
chr8 (23-127)||(43978399-43978505)
chr8 (74-123)||(23636598-23636647)
chr8 (23-92)||(24211693-24211762)
[»] chr7 (6 HSPs)
chr7 (36-127)||(9600213-9600303)
chr7 (36-127)||(9827784-9827874)
chr7 (23-124)||(10427782-10427883)
chr7 (25-92)||(13769109-13769175)
chr7 (72-121)||(29673125-29673174)
chr7 (75-123)||(13851674-13851722)
[»] chr6 (2 HSPs)
chr6 (36-127)||(3024799-3024889)
chr6 (70-106)||(9830780-9830816)
[»] chr5 (2 HSPs)
chr5 (36-127)||(22099098-22099188)
chr5 (75-107)||(24650349-24650381)
[»] chr2 (2 HSPs)
chr2 (45-127)||(21830319-21830400)
chr2 (75-123)||(19177449-19177497)
[»] scaffold1951 (1 HSPs)
scaffold1951 (67-124)||(465-522)
[»] chr1 (1 HSPs)
chr1 (75-119)||(33799138-33799182)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 41333165 - 41333280
Alignment:
Q  163 catgggccagctgaggctgcggtgaaaacttcaaacatatcattgtactgcttataacttaaattggataaacttgctagctgctacaaaatttgtttaa 262  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41333165 catgggccagctgaggctgctgtgaaaacttcaaacatatcattgtactgcttataacttaaattggataaacttgctagctgctacaaaatttgtttaa 41333264  T
Q  263 tttgggacttcacttg 278  Q
    ||||||||||||||||    
T  41333265 tttgggacttcacttg 41333280  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 41333016 - 41333136
Alignment:
Q  7 tttggtgttgtggagcttttttgtttgcctttggcactagacattaaccttgtaacttgattggatgattctcttttgcagaccttatacgagatgaatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  41333016 tttggtgttgtggagcttttttgtttgcctttggcactagacattaatcttgtaacttgattggatgattctcttttgcagaccttctgcgagatgaatc 41333115  T
Q  107 acttttagtgatttaattcca 127  Q
    ||||||| |||||||||||||    
T  41333116 acttttattgatttaattcca 41333136  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 10359052 - 10359112
Alignment:
Q  67 ttggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaattcca 127  Q
    |||| ||||||||||||||| ||||| | | |||||||||||| || ||||||||||||||    
T  10359052 ttgggtgattctcttttgcacaccttgtgctagatgaatcactcttggtgatttaattcca 10359112  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 10153413 - 10153449
Alignment:
Q  75 ttctcttttgcagaccttatacgagatgaatcacttt 111  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  10153413 ttctcttttgcacaccttatgcgagatgaatcacttt 10153449  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 9259639 - 9259758
Alignment:
Q  7 tttggtgttgtggagcttttttgtttgcctttggcactagacattaaccttgtaacttgattggatgattctcttttgcagaccttatacgagatgaatc 106  Q
    ||||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||     
T  9259639 tttggtgttgtggagcttttc-gtttgcttttggcacaagacattaaccttgtaacttgattggatgattctcttttgcacaccttgtaagagataaatt 9259737  T
Q  107 acttttagtgatttaattcca 127  Q
    | |||| ||| ||||||||||    
T  9259738 agtttttgtgttttaattcca 9259758  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 30187311 - 30187251
Alignment:
Q  67 ttggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaattcca 127  Q
    |||| ||||||||||||||| ||||| | |||||||||||||| |||||||||||||||||    
T  30187311 ttgggtgattctcttttgcacaccttgtgcgagatgaatcactcttagtgatttaattcca 30187251  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 646439 - 646499
Alignment:
Q  67 ttggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaattcca 127  Q
    |||| ||||||||||||||| || |||||||||||||||||||  | ||||||||||||||    
T  646439 ttgggtgattctcttttgcatactttatacgagatgaatcactcatggtgatttaattcca 646499  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 20358056 - 20358101
Alignment:
Q  67 ttggatgattctcttttgcagaccttatacgagatgaatcactttt 112  Q
    |||| ||||||||||||||| |||||||| ||||||||||| ||||    
T  20358056 ttgggtgattctcttttgcacaccttatatgagatgaatcattttt 20358101  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 14092715 - 14092771
Alignment:
Q  67 ttggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaat 123  Q
    |||| |||||||||||| || ||||| | |||||||||||||| ||| |||||||||    
T  14092715 ttgggtgattctcttttacacaccttgtgcgagatgaatcactcttaatgatttaat 14092771  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 43978399 - 43978505
Alignment:
Q  23 ttttttgtttgcctttggcactagacat--taaccttgtaacttgattggatgattctcttttgcagaccttatacgagatgaatcacttttagtgattt 120  Q
    |||||||||||| |||||||  ||||||  |||| ||||||||||||||| ||||||||| ||||| ||||| | |||||||||||| |||| |||||||    
T  43978399 ttttttgtttgcttttggcatcagacatattaacattgtaacttgattgggtgattctctattgcataccttgtgcgagatgaatcatttttggtgattt 43978498  T
Q  121 aattcca 127  Q
    |||||||    
T  43978499 aattcca 43978505  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 23636647 - 23636598
Alignment:
Q  74 attctcttttgcagaccttatacgagatgaatcacttttagtgatttaat 123  Q
    ||||||||||||| ||||| |||||||||||||||| || ||||||||||    
T  23636647 attctcttttgcacaccttgtacgagatgaatcactcttggtgatttaat 23636598  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 24211693 - 24211762
Alignment:
Q  23 ttttttgtttgcctttggcactagacattaaccttgtaacttgattggatgattctcttttgcagacctt 92  Q
    |||||| ||||| ||||||||  |||||| || |||||| ||||||||  |||||||||||||| |||||    
T  24211693 ttttttttttgcttttggcacctgacatttactttgtaatttgattgggcgattctcttttgcacacctt 24211762  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 9600303 - 9600213
Alignment:
Q  36 tttggcactagacattaaccttgtaacttgattggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaattcca 127  Q
    |||||||| |||| |||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||  | ||||||||||||||||    
T  9600303 tttggcaccagactttaaccttgtaatttg-ttggatgattctcttttgcacaccttgtacgagatgaatcatctatagtgatttaattcca 9600213  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 9827874 - 9827784
Alignment:
Q  36 tttggcactagacattaaccttgtaacttgattggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaattcca 127  Q
    |||||||| |||| |||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||  | ||||||||||||||||    
T  9827874 tttggcaccagactttaaccttgtaatttg-ttggatgattctcttttgcacaccttgtacgagatgaatcatctatagtgatttaattcca 9827784  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 10427782 - 10427883
Alignment:
Q  23 ttttttgtttgcctttggcactagacattaaccttgtaacttgattggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaa 122  Q
    |||||||||||| ||||  || | | |||||| |||||| |||||||| ||||||||||||||| ||||| | ||||||||||||||||| |||||||||    
T  10427782 ttttttgtttgcttttgctaccaaatattaactttgtaatttgattgggtgattctcttttgcacaccttgtgcgagatgaatcacttttggtgatttaa 10427881  T
Q  123 tt 124  Q
    ||    
T  10427882 tt 10427883  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 13769109 - 13769175
Alignment:
Q  25 ttttgtttgcctttggcactagacattaaccttgtaacttgattggatgattctcttttgcagacctt 92  Q
    ||||| |||| |||||||| |||||||||| ||||||||||||||   |||||||||||||| |||||    
T  13769109 ttttgcttgcttttggcaccagacattaac-ttgtaacttgattgagagattctcttttgcacacctt 13769175  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 29673125 - 29673174
Alignment:
Q  72 tgattctcttttgcagaccttatacgagatgaatcacttttagtgattta 121  Q
    ||||||||||||||| ||||| |||||||| |||| |||||| |||||||    
T  29673125 tgattctcttttgcataccttgtacgagattaatcgcttttaatgattta 29673174  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 13851674 - 13851722
Alignment:
Q  75 ttctcttttgcagaccttatacgagatgaatcacttttagtgatttaat 123  Q
    |||||||||||| ||||| |||||||||||||||| || ||||| ||||    
T  13851674 ttctcttttgcacaccttgtacgagatgaatcactctttgtgatctaat 13851722  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 3024889 - 3024799
Alignment:
Q  36 tttggcactagacattaaccttgtaacttgattggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaattcca 127  Q
    |||| |||||||| |||||||||||| ||| |||| ||||||||||||||| ||||||| ||||||||||||| |||  |||||||||||||    
T  3024889 tttgacactagactttaaccttgtaatttg-ttgggtgattctcttttgcacaccttatgcgagatgaatcacctttgatgatttaattcca 3024799  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 9830780 - 9830816
Alignment:
Q  70 gatgattctcttttgcagaccttatacgagatgaatc 106  Q
    ||||||||||||||||| | |||||||||||||||||    
T  9830780 gatgattctcttttgcacatcttatacgagatgaatc 9830816  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 22099098 - 22099188
Alignment:
Q  36 tttggcactagacattaaccttgtaacttgattggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaattcca 127  Q
    |||||||| |||| |||||||||||| ||| |||| ||||||||||||||| ||||| | ||||||||||||| | | ||||||||||||||    
T  22099098 tttggcaccagactttaaccttgtaatttgtttgg-tgattctcttttgcacaccttgtgcgagatgaatcacctatggtgatttaattcca 22099188  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 24650349 - 24650381
Alignment:
Q  75 ttctcttttgcagaccttatacgagatgaatca 107  Q
    |||||||||||| ||||||||||||||||||||    
T  24650349 ttctcttttgcacaccttatacgagatgaatca 24650381  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 21830319 - 21830400
Alignment:
Q  45 agacattaaccttgtaacttgattggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaattcca 127  Q
    |||| |||||||||||||||| | || ||||||||||| ||| | ||||| |||||||||||||| |||||||||||||||||    
T  21830319 agaccttaaccttgtaacttgttcgg-tgattctctttcgcacatcttatgcgagatgaatcactcttagtgatttaattcca 21830400  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 19177449 - 19177497
Alignment:
Q  75 ttctcttttgcagaccttatacgagatgaatcacttttagtgatttaat 123  Q
    |||||||||||| ||||| ||||||||||||| ||||| ||||||||||    
T  19177449 ttctcttttgcacaccttgtacgagatgaatcgcttttcgtgatttaat 19177497  T

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Target: scaffold1951 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 522 - 465
Alignment:
Q  67 ttggatgattctcttttgcagaccttatacgagatgaatcacttttagtgatttaatt 124  Q
    |||| ||||||||||||||| ||||| | |||||||||||||| || |||||||||||    
T  522 ttgggtgattctcttttgcacaccttgtgcgagatgaatcactcttggtgatttaatt 465  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 33799182 - 33799138
Alignment:
Q  75 ttctcttttgcagaccttatacgagatgaatcacttttagtgatt 119  Q
    |||||||||||| ||||| | ||||||||||||||||| ||||||    
T  33799182 ttctcttttgcacaccttgtgcgagatgaatcactttttgtgatt 33799138  T

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