View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9616_low_27 (Length: 251)

Name: NF9616_low_27
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9616_low_27
NF9616_low_27
[»] scaffold0024 (3 HSPs)
scaffold0024 (19-235)||(121305-121521)
scaffold0024 (141-235)||(114534-114632)
scaffold0024 (43-80)||(114662-114699)
[»] chr1 (5 HSPs)
chr1 (106-177)||(19809049-19809120)
chr1 (138-190)||(19808804-19808856)
chr1 (138-182)||(30066493-30066537)
chr1 (145-189)||(32581076-32581120)
chr1 (145-189)||(32630389-32630433)
[»] chr4 (4 HSPs)
chr4 (53-190)||(6986694-6986830)
chr4 (90-171)||(5078939-5079020)
chr4 (138-179)||(5079213-5079254)
chr4 (145-182)||(40829678-40829715)
[»] chr3 (5 HSPs)
chr3 (90-158)||(21144012-21144080)
chr3 (138-182)||(21143739-21143783)
chr3 (121-190)||(354365-354434)
chr3 (138-179)||(20668313-20668354)
chr3 (138-175)||(46560751-46560788)
[»] chr6 (3 HSPs)
chr6 (145-206)||(10890389-10890450)
chr6 (138-179)||(29246426-29246467)
chr6 (145-216)||(7712275-7712346)
[»] chr8 (2 HSPs)
chr8 (95-187)||(17595133-17595225)
chr8 (107-175)||(3022110-3022178)
[»] chr7 (2 HSPs)
chr7 (90-173)||(21091026-21091109)
chr7 (94-163)||(5560978-5561047)
[»] chr2 (3 HSPs)
chr2 (98-151)||(13256262-13256315)
chr2 (94-182)||(42467845-42467933)
chr2 (145-182)||(29929992-29930029)
[»] chr5 (2 HSPs)
chr5 (149-182)||(28478134-28478167)
chr5 (145-189)||(28827255-28827299)


Alignment Details
Target: scaffold0024 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 121521 - 121305
Alignment:
Q  19 aaactctcatgacaacaagaaatgttatagatgaattttgacacaaagttgacaacaaatttacactatagtttggatggttaatgcaattcaaatacat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||    
T  121521 aaactctcatgacaacaagaaatgttatagatgaattttgacacaaagttgacaacaaatttcaactacagtttggatggttaatgcaattcaaatatat 121422  T
Q  119 gcttaattacatttaataaatggttgatgaatataacaaggtgtcacaactcattaaccatccattaaacatcaatatccacgattttaagcgtcatttg 218  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||    
T  121421 gattaattacatttaataaatggttgatgaatataacaaggtgtcacaactcattaaccatccactaaacgtaaatatccacaattttaagcgtcatttg 121322  T
Q  219 taggactaaaatgagaa 235  Q
    |||||||||||||||||    
T  121321 taggactaaaatgagaa 121305  T

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Target: scaffold0024; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 114632 - 114534
Alignment:
Q  141 gttgatgaatataacaaggtgtcacaactcattaaccatccattaaacatca----atatccacgattttaagcgtcatttgtaggactaaaatgagaa 235  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |     ||||| ||||||||||||||||||| ||||||||||||||||    
T  114632 gttgatgaatataacaaggtgtcacaactcattaaccatccactaaacataactttttatccgcgattttaagcgtcatttgcaggactaaaatgagaa 114534  T

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Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 114699 - 114662
Alignment:
Q  43 ttatagatgaattttgacacaaagttgacaacaaattt 80  Q
    |||||||||||||||||||||||||||||||| |||||    
T  114699 ttatagatgaattttgacacaaagttgacaacgaattt 114662  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 19809120 - 19809049
Alignment:
Q  106 aattcaaatacatgcttaattacatttaataaatggttgatgaatataacaaggtgtcacaactcattaacc 177  Q
    |||||||||||||| ||||||||||||| || ||| || |||||||||||||||||| ||||||||||||||    
T  19809120 aattcaaatacatggttaattacatttagtagatgattaatgaatataacaaggtgttacaactcattaacc 19809049  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 19808804 - 19808856
Alignment:
Q  138 atggttgatgaatataacaaggtgtcacaactcattaaccatccattaaacat 190  Q
    |||||| | ||||||||||||||||||||||||| ||| |||||||| |||||    
T  19808804 atggttaacgaatataacaaggtgtcacaactcagtaatcatccattgaacat 19808856  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 30066493 - 30066537
Alignment:
Q  138 atggttgatgaatataacaaggtgtcacaactcattaaccatcca 182  Q
    |||||| | ||| ||| ||||||||||||||||||||||||||||    
T  30066493 atggtttacgaaaatagcaaggtgtcacaactcattaaccatcca 30066537  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 32581076 - 32581120
Alignment:
Q  145 atgaatataacaaggtgtcacaactcattaaccatccattaaaca 189  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||    
T  32581076 atgaatataacaagctgtcgcaactcattaacaatccactaaaca 32581120  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 32630389 - 32630433
Alignment:
Q  145 atgaatataacaaggtgtcacaactcattaaccatccattaaaca 189  Q
    |||||||||||||| |||| |||||||||||| || |||||||||    
T  32630389 atgaatataacaagttgtcgcaactcattaacaattcattaaaca 32630433  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 6986830 - 6986694
Alignment:
Q  53 attttgacacaaagttgacaacaaatttacactatagtttggatggttaatgcaattcaaatacatgcttaattacatttaataaatggttgatgaatat 152  Q
    ||||||||| ||| | ||||||||||||  |  ||| ||| ||||||||||||| |||||||||| | ||||||||||    | | ||||| ||||||||    
T  6986830 attttgacataaattagacaacaaatttcgaaaataatttagatggttaatgcagttcaaatacacggttaattacatcctgtga-tggttaatgaatat 6986732  T
Q  153 aacaaggtgtcacaactcattaaccatccattaaacat 190  Q
     |||||||||  ||||||||||||||||||||||||||    
T  6986731 gacaaggtgttgcaactcattaaccatccattaaacat 6986694  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 5078939 - 5079020
Alignment:
Q  90 tttggatggttaatgcaattcaaatacatgcttaattacatttaataaatggttgatgaatataacaaggtgtcacaactca 171  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||| || ||| ||  |||||||||| | ||||| |||||||    
T  5078939 tttggatggttaatgcagttcaaatatatggttaattacatttagtagatgattagtgaatataacgaagtgtcgcaactca 5079020  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 5079254 - 5079213
Alignment:
Q  138 atggttgatgaatataacaaggtgtcacaactcattaaccat 179  Q
    |||||| || ||||||||||||| ||||||||||||||||||    
T  5079254 atggttaataaatataacaaggtatcacaactcattaaccat 5079213  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 40829715 - 40829678
Alignment:
Q  145 atgaatataacaaggtgtcacaactcattaaccatcca 182  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  40829715 atgaatataacaaggtgtagcaactcattaaccatcca 40829678  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 21144080 - 21144012
Alignment:
Q  90 tttggatggttaatgcaattcaaatacatgcttaattacatttaataaatggttgatgaatataacaag 158  Q
    |||||||||||||||||||||||||||||| |||||||  || | || |||||| ||||||||||||||    
T  21144080 tttggatggttaatgcaattcaaatacatggttaattatgttaagtagatggttaatgaatataacaag 21144012  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 21143739 - 21143783
Alignment:
Q  138 atggttgatgaatataacaaggtgtcacaactcattaaccatcca 182  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||    
T  21143739 atggttaatgaatataacaaagtgtcacaactcattaatcatcca 21143783  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 354434 - 354365
Alignment:
Q  121 ttaattacatttaataaatggttgatgaatataacaaggtgtcacaactcattaaccatccattaaacat 190  Q
    ||||||||||||  || |||||| ||||||||||| | ||| | |||||||||||||||| ||| |||||    
T  354434 ttaattacatttggtagatggttaatgaatataactaagtgccgcaactcattaaccatctattgaacat 354365  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 20668354 - 20668313
Alignment:
Q  138 atggttgatgaatataacaaggtgtcacaactcattaaccat 179  Q
    |||||| |||||||| |||||||||| |||||||||||||||    
T  20668354 atggttaatgaatatgacaaggtgtcgcaactcattaaccat 20668313  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 46560788 - 46560751
Alignment:
Q  138 atggttgatgaatataacaaggtgtcacaactcattaa 175  Q
    |||||| || ||||||||||||||||||||||||||||    
T  46560788 atggttaatcaatataacaaggtgtcacaactcattaa 46560751  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 10890450 - 10890389
Alignment:
Q  145 atgaatataacaaggtgtcacaactcattaaccatccattaaacatcaatatccacgatttt 206  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||  | |||||||||||||    
T  10890450 atgaatataacaaggtgtcacgactcattaaccatccactgaacacaattatccacgatttt 10890389  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 29246467 - 29246426
Alignment:
Q  138 atggttgatgaatataacaaggtgtcacaactcattaaccat 179  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  29246467 atggttaatgaatataacaaggtgtcgcaactcattaaccat 29246426  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 7712346 - 7712275
Alignment:
Q  145 atgaatataacaaggtgtcacaactcattaaccatccattaaacatcaatatccacgattttaagcgtcatt 216  Q
    |||||||||||||||||||||||||||||||  ||| | | |||||   || |||||||||||| |||||||    
T  7712346 atgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcatt 7712275  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 17595225 - 17595133
Alignment:
Q  95 atggttaatgcaattcaaatacatgcttaattacatttaataaatggttgatgaatataacaaggtgtcacaactcattaaccatccattaaa 187  Q
    |||||||| ||| || ||| ||||||||||||||  |   | |||||||| |||||||||||||||||| ||||||||||| ||||| |||||    
T  17595225 atggttaacgcagtttaaacacatgcttaattacgctgcgtgaatggttggtgaatataacaaggtgtctcaactcattaatcatccgttaaa 17595133  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 3022178 - 3022110
Alignment:
Q  107 attcaaatacatgcttaattacatttaataaatggttgatgaatataacaaggtgtcacaactcattaa 175  Q
    ||||||||||||| ||||||||||||| |||||   | |||||||| | |||||||  |||||||||||    
T  3022178 attcaaatacatgattaattacatttagtaaataactaatgaatatgataaggtgttgcaactcattaa 3022110  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 21091026 - 21091109
Alignment:
Q  90 tttggatggttaatgcaattcaaatacatgcttaattacatttaataaatggttgatgaatataacaaggtgtcacaactcatt 173  Q
    ||||||| || ||| ||| ||||||||||| ||| |||| |||| |||||| || |||| || |||||||||||||||||||||    
T  21091026 tttggatagtaaatccaaatcaaatacatggttatttacgtttagtaaatgattaatgactaaaacaaggtgtcacaactcatt 21091109  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 5561047 - 5560978
Alignment:
Q  94 gatggttaatgcaattcaaatacatgcttaattacatttaataaatggttgatgaatataacaaggtgtc 163  Q
    |||| |||||||| || ||||| ||| |||||||| || | || |||||| |||||||||||||||||||    
T  5561047 gatgattaatgcagtttaaatatatggttaattacgttcactagatggttaatgaatataacaaggtgtc 5560978  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 13256262 - 13256315
Alignment:
Q  98 gttaatgcaattcaaatacatgcttaattacatttaataaatggttgatgaata 151  Q
    |||||| ||||||||||||||| ||||||||||||| || || |||||||||||    
T  13256262 gttaatacaattcaaatacatggttaattacatttagtagatagttgatgaata 13256315  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 42467933 - 42467845
Alignment:
Q  94 gatggttaatgcaattcaaatacatgcttaattacatttaataaatggttgatgaatataacaaggtgtcacaactcattaaccatcca 182  Q
    ||||||||||||| ||||||||  || |||||||  |||| |  ||| || | || |||||||||||||||||||||||||||| ||||    
T  42467933 gatggttaatgcagttcaaatatgtggttaattatgtttagtggatgcttaacgagtataacaaggtgtcacaactcattaaccgtcca 42467845  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 29930029 - 29929992
Alignment:
Q  145 atgaatataacaaggtgtcacaactcattaaccatcca 182  Q
    |||||||||||||||||||| || ||||||||||||||    
T  29930029 atgaatataacaaggtgtcaaaattcattaaccatcca 29929992  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 28478134 - 28478167
Alignment:
Q  149 atataacaaggtgtcacaactcattaaccatcca 182  Q
    ||||||||||||||||||| ||||||||||||||    
T  28478134 atataacaaggtgtcacaattcattaaccatcca 28478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 28827255 - 28827299
Alignment:
Q  145 atgaatataacaaggtgtcacaactcattaaccatccattaaaca 189  Q
    |||||||||||||| |||||||| | ||||||||| |||||||||    
T  28827255 atgaatataacaagatgtcacaagttattaaccattcattaaaca 28827299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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