View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_low_28 (Length: 250)
Name: NF9616_low_28
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_28 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14278491 - 14278726
Alignment:
| Q |
1 |
cactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacctaccaacctgctccannnnnnnncgacatgtttctcccac |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14278491 |
cactaatagttccttatattttgttgtatgatactcccattcatggtaagcatcatcacctaccaacctgctccatttttgttcgacatgtttctcccac |
14278590 |
T |
|
| Q |
101 |
aaacaatcgcctctactaatattcctcaaacgactacacacttgcgatatcctatacaaatcttgtggtgaaagacacttaagtatgcaatgtacaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14278591 |
aaacaatcgcctctactaatattcctcaaacgactacacacttgcgatatcctatacaaatcttgtggtgaaagacgcttaagtatgcaatgtacaattt |
14278690 |
T |
|
| Q |
201 |
caccaggtaaatctaaaagagaaaccttgcaatccc |
236 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| |
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| T |
14278691 |
catcaggtaaatctaaaagagaaaccttgcaatccc |
14278726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14283969 - 14284204
Alignment:
| Q |
1 |
cactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacctaccaacctgctccannnnnnnncgacatgtttctcccac |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |
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| T |
14283969 |
cactaatagtcctttatattttgttgtatgatactcccattcatggtaagcatcattacctaccaacatgctccacttttgttcgacatgtttctcccat |
14284068 |
T |
|
| Q |
101 |
aaacaatcgcctctactaatattcctcaaacgactacacacttgcgatatcctatacaaatcttgtggtgaaagacacttaagtatgcaatgtacaattt |
200 |
Q |
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| T |
14284069 |
aaataatcgcttctactcatgttcctcaaattagtacacacttgtgctatcctaaacaaatcttgtgatgaaagatgcttaatgatgcaatgtacaactt |
14284168 |
T |
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| Q |
201 |
caccaggtaaatctaaaagagaaaccttgcaatccc |
236 |
Q |
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|| ||| ||||||||||||||||||||||||||||| |
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| T |
14284169 |
catcagataaatctaaaagagaaaccttgcaatccc |
14284204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14258651 - 14258758
Alignment:
| Q |
1 |
cactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacctaccaacctgctccannnnnnnncgacatgtttctcccac |
100 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| ||| |
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| T |
14258651 |
cactaatagtcctttatattttgttgtatgctactcccattcatggtaagcattattacctaccaacctgctccatttttgttcgacatgtttctctcac |
14258750 |
T |
|
| Q |
101 |
aaacaatc |
108 |
Q |
| |
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|||||||| |
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| T |
14258751 |
aaacaatc |
14258758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2999 - 2774
Alignment:
| Q |
1 |
cactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacctaccaacctgctccannnnnnnncgacatgtttctcccac |
100 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2999 |
cactaatagttccttacattttgttgtatgatacttccattcatggtaagcatcatcacctaccaacctgctccatttttgttcgacatgtttctcccac |
2900 |
T |
|
| Q |
101 |
aaacaatcgcctctactaatattcctcaaacgactacacacttgcgatatcctatacaaatcttgtggtgaaagacacttaagtatgcaatgtacaattt |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| ||| |||||||| |
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| T |
2899 |
atacaatcgcctctactaatattcctcaaacgactacacacttgcgataacctaatcaaatcttgtggtgaaagacgtttaagtatgtaatctacaattt |
2800 |
T |
|
| Q |
201 |
caccaggtaaatctaaaagagaaacc |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
2799 |
caccaggtaaatctaaaagagaaacc |
2774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35131442 - 35131677
Alignment:
| Q |
1 |
cactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacctaccaacctgctccannnnnnnncgacatgtttctcccac |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||| |
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| T |
35131442 |
cactaatagttccttatattttgttgtatgatactcccattcatggtaagcatcattacctagcaacctgctccatttttgttccacatgtttctcccac |
35131541 |
T |
|
| Q |
101 |
aaacaatcgcctctactaatattcctcaaacgactacacacttgcgatatcctatacaaatcttgtggtgaaagacacttaagtatgcaatgtacaattt |
200 |
Q |
| |
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||| ||| | ||||||||||||||||||| | |||||||||| | || |||| ||||||||||||||||||||||||| || ||||||| |||| || |
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| T |
35131542 |
aaatgatcccttctactaatattcctcaaatgggtacacacttgtgctaccctaaacaaatcttgtggtgaaagacacttgaggatgcaatccacaagtt |
35131641 |
T |
|
| Q |
201 |
caccaggtaaatctaaaagagaaaccttgcaatccc |
236 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| |
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| T |
35131642 |
catcaggtaaatctaaaagagaaaccttgcaatccc |
35131677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35138750 - 35138985
Alignment:
| Q |
1 |
cactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacctaccaacctgctccannnnnnnncgacatgtttctcccac |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||| |
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|
| T |
35138750 |
cactaatagttccttatattttgttgtatgatactcccattcatggtaagcatcattacctagcaacctgctccatttttgttccacatgtttctcccac |
35138849 |
T |
|
| Q |
101 |
aaacaatcgcctctactaatattcctcaaacgactacacacttgcgatatcctatacaaatcttgtggtgaaagacacttaagtatgcaatgtacaattt |
200 |
Q |
| |
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||| ||| | ||||||||||||||||||| | |||||||||| | || |||| |||||||||||||||||||| |||| || ||||||| |||| || |
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| T |
35138850 |
aaatgatcccttctactaatattcctcaaatgggtacacacttgtgctaccctaaacaaatcttgtggtgaaagaaacttgaggatgcaatccacaagtt |
35138949 |
T |
|
| Q |
201 |
caccaggtaaatctaaaagagaaaccttgcaatccc |
236 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| |
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| T |
35138950 |
catcaggtaaatctaaaagagaaaccttgcaatccc |
35138985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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