View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9616_low_30 (Length: 242)
Name: NF9616_low_30
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_30 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 37628697 - 37628923
Alignment:
| Q |
16 |
agagaaaagctactatggagaaaatcaaggatgcttgtgaaaactggggattctttgaggtactttatgaactcaatattcgtttcatataaatttctac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37628697 |
agagaaaagctactatggagaaaatcaaggatgcttgtgaaaactggggattctttgaggtactttatgaactcaatattcgtttcatataaatttctac |
37628796 |
T |
|
| Q |
116 |
attggtctctaaatctctattcatgtttgnnnnnnngtagctggtgaatcatggcatacctcatgacttaatggacactgtggagaggttaaccaaagaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37628797 |
attggtctctaaatctctattcatgtttgtttttttgtagctggtgaatcatggcatacctcatgacttaatggacactgtggagaggttaaccaaagaa |
37628896 |
T |
|
| Q |
216 |
cactacaggaaatgcatggagcaaaga |
242 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
37628897 |
cactacaggaaatgcatggaacaaaga |
37628923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 36872598 - 36872513
Alignment:
| Q |
153 |
tagctggtgaatcatggcatacctcatgacttaatggacactgtggagaggttaaccaaagaacactacaggaaatgcatggagca |
238 |
Q |
| |
|
||||||||||||||||| ||||| |||||| | |||||||| |||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
36872598 |
tagctggtgaatcatggtataccccatgaccttatggacacattggagaggttgaccaaagagcactataggaaatgcatggagca |
36872513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 36872765 - 36872705
Alignment:
| Q |
18 |
agaaaagctactatggagaaaatcaaggatgcttgtgaaaactggggattctttgaggtac |
78 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
36872765 |
agaaaagataccatggagaaaattaaggatgcttgtgagaattggggattctttgaggtac |
36872705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 8926151 - 8926214
Alignment:
| Q |
16 |
agagaaaagctactatggagaaaatcaaggatgcttgtgaaaactggggattctttgaggtact |
79 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
8926151 |
agagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggtact |
8926214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University