View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9616_low_31 (Length: 242)

Name: NF9616_low_31
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9616_low_31
NF9616_low_31
[»] chr6 (10 HSPs)
chr6 (1-224)||(2997831-2998054)
chr6 (52-221)||(2972470-2972641)
chr6 (1-224)||(2934020-2934243)
chr6 (1-154)||(2929307-2929460)
chr6 (1-216)||(3004223-3004435)
chr6 (1-196)||(2963902-2964098)
chr6 (52-225)||(2982338-2982517)
chr6 (1-224)||(2926581-2926804)
chr6 (1-224)||(2951363-2951586)
chr6 (102-221)||(2659440-2659559)
[»] chr7 (1 HSPs)
chr7 (1-192)||(3338602-3338793)
[»] scaffold0024 (1 HSPs)
scaffold0024 (49-221)||(35664-35836)
[»] chr3 (2 HSPs)
chr3 (127-196)||(49612956-49613025)
chr3 (136-196)||(49617976-49618035)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2998054 - 2997831
Alignment:
Q  1 cttttcattttcttgctgactatcaatatgccattctccggtttagtggatgatatcaatgccatgctcgacggagcagagccaccttcaaccggtgact 100  Q
    ||||||||||||||||||||| |||||||| |||| |||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  2998054 cttttcattttcttgctgactctcaatatgtcattttccgatttggtggatgatatcaatgccatgcttgaaggagcagagccaccttcaaccggtgact 2997955  T
Q  101 gttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggtcacctcca 200  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||| ||||| |  ||    
T  2997954 gttgcatctacaaggtcccctctaaaattcgcaaactcaacgcagacgcatacacccccactgtcgtttccattggcccctttcaccatggtcatccaca 2997855  T
Q  201 tatccaaaacatggaacgtcagaa 224  Q
      ||||||||||||||| ||||||    
T  2997854 gctccaaaacatggaacctcagaa 2997831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 2972470 - 2972641
Alignment:
Q  52 gatatcaatgccatgctcgacggagcagagccaccttcaaccggtgactgttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgc-- 149  Q
    ||||||||||  |||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||      
T  2972470 gatatcaatgtgatgctcgacacagaagagccaccttcaaccggtgactgttgcatctacaaggtcccctctaaaattcgcaaactcaacgaagaggcat 2972569  T
Q  150 atacactcccaaagtcgtttccattggcccctttcaccacggtcacctccatatccaaaacatggaacgtca 221  Q
    ||||||||||||||||||||||||||||||||||||||||| |||   |||  |||||||||||||||||||    
T  2972570 atacactcccaaagtcgtttccattggcccctttcaccacgttcaaacccagctccaaaacatggaacgtca 2972641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2934020 - 2934243
Alignment:
Q  1 cttttcattttcttgctgactatcaatatgccattctccggtttagtggatgatatcaatgccatgctcgacggagcagagccaccttcaaccggtgact 100  Q
    ||||||||||||||||||||| |||||||| || ||||| | || ||   ||||||||||||||||||||||  ||||||| |||||||||||| |||||    
T  2934020 cttttcattttcttgctgactctcaatatgtcactctccagcttggttattgatatcaatgccatgctcgacaaagcagagtcaccttcaaccgatgact 2934119  T
Q  101 gttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggtcacctcca 200  Q
    |||||||||| ||||| || | |   ||||||| || |||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||||| |||    
T  2934120 gttgcatctataaggtcccttatgttattcgcagacacaacaaagacgcatacacccccactgtcgtttccattggcccctttcaccacggtcaccccca 2934219  T
Q  201 tatccaaaacatggaacgtcagaa 224  Q
      |||||||||||||| |||||||    
T  2934220 gctccaaaacatggaaagtcagaa 2934243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 2929307 - 2929460
Alignment:
Q  1 cttttcattttcttgctgactatcaatatgccattctccggtttagtggatgatatcaatgccatgctcgacggagcagagccaccttcaaccggtgact 100  Q
    ||||||||||||||||| ||| |||| ||| ||| |||| | || |||||||||||||||||||||||| ||  |||||||||||||||||| | |||||    
T  2929307 cttttcattttcttgctaactctcaagatgtcatcctcccgcttggtggatgatatcaatgccatgctcaacacagcagagccaccttcaactgatgact 2929406  T
Q  101 gttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcataca 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2929407 gttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcataca 2929460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3004435 - 3004223
Alignment:
Q  1 cttttcattttcttgctgactatcaatatgccattctccggtttagtggatgatatcaatgccatgctcgacggagcagagccaccttcaaccggtgact 100  Q
    ||||||||||||||||| ||| |||||||| |||||||| | || |||||||||||||||||||||||| ||  ||| |||||||||||   || | | |    
T  3004435 cttttcattttcttgctaactctcaatatgtcattctccagcttggtggatgatatcaatgccatgctcaacacagccgagccaccttc---cgataagt 3004339  T
Q  101 gttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggtcacctcca 200  Q
    |||||||||||||||| |||| |   ||||||| || |||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||||| |||    
T  3004338 gttgcatctacaaggtcccctatgttattcgcagacacaacaaagacgcatacacccccactgtcgtttccattggcccctttcaccacggtcaccccca 3004239  T
Q  201 tatccaaaacatggaa 216  Q
      ||||||||||||||    
T  3004238 gctccaaaacatggaa 3004223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 2963902 - 2964098
Alignment:
Q  1 cttttcattttcttgctgac-tatcaatatgccattctccggtttagtggatgatatcaatgccatgctcgacggagcagagccaccttcaaccggtgac 99  Q
    |||||||||||||||||||| | |||| ||| |||||||| | || ||  ||||||||||  |||||||||||  |||||||||||||||||||  |||     
T  2963902 cttttcattttcttgctgacctctcaagatgtcattctcccgcttggttaatgatatcaaaaccatgctcgacacagcagagccaccttcaacctatgat 2964001  T
Q  100 tgttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggtcacc 196  Q
    ||||||||||||||||| |||||| | ||||||| |||||||||| |||||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  2964002 tgttgcatctacaaggtcccctctgatattcgcacactcaacgaaaacgcatacacccccaagttcgtttccatcggcccctttcaccacggtcacc 2964098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 2982338 - 2982517
Alignment:
Q  52 gatatcaatgccatgctcgacggagcagagccaccttcaaccggtgactgttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcat 151  Q
    ||||||||||| ||||||||| | |||||||||||| |||||   ||| |||||||||||||||| ||||||   ||||||| | |||||||| ||||||    
T  2982338 gatatcaatgcgatgctcgacagcgcagagccacctccaaccaaggaccgttgcatctacaaggtcccctctgttattcgcacagtcaacgaaaacgcat 2982437  T
Q  152 acactcccaaagtcgtttccattggcccctttcaccacggtca------cctccatatccaaaacatggaacgtcagaag 225  Q
    |||| ||||| ||||||||||||||||||||||||||||||||      ||||||| |||||||||||||||||||||||    
T  2982438 acacccccaatgtcgtttccattggcccctttcaccacggtcacctaggcctccatctccaaaacatggaacgtcagaag 2982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2926581 - 2926804
Alignment:
Q  1 cttttcattttcttgctgactatcaatatgccattctccggtttagtggatgatatcaatgccatgctcgacggagcagagccaccttcaaccggtgact 100  Q
    ||||||||||||||| ||||| |||| ||| ||| |||| | ||  || | ||||||||| |||||||| ||  ||||||| |||||||||||| |||||    
T  2926581 cttttcattttcttggtgactctcaagatgtcatcctcccgcttgctgaaggatatcaattccatgctcaacacagcagagtcaccttcaaccgatgact 2926680  T
Q  101 gttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggtcacctcca 200  Q
    |||| ||||| ||||| |||| |   ||||||| || |||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||| | |||    
T  2926681 gttgtatctataaggtcccctatgttattcgcagacacaacaaagacgcatacacccccaaggtcgtttctattggcccctttcaccacggtcaacccca 2926780  T
Q  201 tatccaaaacatggaacgtcagaa 224  Q
      |||||||||||||| |||||||    
T  2926781 gctccaaaacatggaaagtcagaa 2926804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2951363 - 2951586
Alignment:
Q  1 cttttcattttcttgctgactatcaatatgccattctccggtttagtggatgatatcaatgccatgctcgacggagcagagccaccttcaaccggtgact 100  Q
    ||||||||| ||||||||||| | || ||| ||| |||| | || ||| ||||||||||||| |||||| ||  |||| | ||||||||||| | ||| |    
T  2951363 cttttcattctcttgctgactctgaagatgtcatcctcctgcttggtgaatgatatcaatgcgatgctccacacagcacatccaccttcaacagatgagt 2951462  T
Q  101 gttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggtcacctcca 200  Q
    |||||||||||||||| |||| |   |||||||  | |||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||    
T  2951463 gttgcatctacaaggtcccctatgttattcgcaggcacaacaaagacgcatacacccccaaggtcgtttccattggcccctttcaccatggtcaccccca 2951562  T
Q  201 tatccaaaacatggaacgtcagaa 224  Q
      |||||||||||||| |||||||    
T  2951563 gctccaaaacatggaaagtcagaa 2951586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 2659559 - 2659440
Alignment:
Q  102 ttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggtcacctccat 201  Q
    ||||||||||||||| ||||||   ||||||| |||||||||| | |||||||| ||||   ||||||||||||||||||||||||| | ||||| |||     
T  2659559 ttgcatctacaaggtcccctctgctattcgcacactcaacgaaaaagcatacacccccactctcgtttccattggcccctttcaccatgatcacccccag 2659460  T
Q  202 atccaaaacatggaacgtca 221  Q
     |||||||||||||||||||    
T  2659459 ctccaaaacatggaacgtca 2659440  T

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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 3338602 - 3338793
Alignment:
Q  1 cttttcattttcttgctgactatcaatatgccattctccggtttagtggatgatatcaatgccatgctcgacggagcagagccaccttcaaccggtgact 100  Q
    ||||||||||||||||||||| |||| ||| ||| |||| | || ||||||||||||||||| |||||||||  | |||||||||||||||||| |||||    
T  3338602 cttttcattttcttgctgactctcaagatgtcatcctcccgcttggtggatgatatcaatgcgatgctcgacacatcagagccaccttcaaccgatgact 3338701  T
Q  101 gttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggt 192  Q
    ||||||||||||| || ||||||   |||||||||| ||| |||||||||||||| || ||  |||||||||||||||||||||||||||||    
T  3338702 gttgcatctacaaagtaccctctgttattcgcaaacacaatgaagacgcatacacccctaagttcgtttccattggcccctttcaccacggt 3338793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 35836 - 35664
Alignment:
Q  49 gatgatatcaatgccatgctcgacggagcagagccaccttcaaccggtgactgttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacg 148  Q
    |||||||| ||||  |||||| ||  ||||||  |||||||||||| | |  |||||||||||||||| ||||||   |||||||||| ||| |||||||    
T  35836 gatgatatgaatgtgatgctccacacagcagatgcaccttcaaccgataatcgttgcatctacaaggtcccctctgttattcgcaaacacaatgaagacg 35737  T
Q  149 catacactcccaaagtcgtttccattggcccctttcaccacggtcacctccatatccaaaacatggaacgtca 221  Q
    ||||||| || ||  ||||||||||||||||||||||||||||||||| |||  || ||||||||||||||||    
T  35736 catacacccctaatttcgtttccattggcccctttcaccacggtcacccccagctcaaaaacatggaacgtca 35664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 49612956 - 49613025
Alignment:
Q  127 attcgcaaactcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggtcacc 196  Q
    |||||||  ||||||  |||||||||||| ||||||||| ||||||||||||| || |||||| ||||||    
T  49612956 attcgcagtctcaacccagacgcatacacccccaaagtcatttccattggccctttccaccacagtcacc 49613025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 49617976 - 49618035
Alignment:
Q  136 ctcaacgaagacgcatacactcccaaagtcgtttccattggcccctttcaccacggtcacc 196  Q
    |||||| |||| |||||||| |||||| || |||||| |||||||||||||||| ||||||    
T  49617976 ctcaaccaagatgcatacac-cccaaactcatttccactggcccctttcaccaccgtcacc 49618035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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