View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_low_35 (Length: 238)
Name: NF9616_low_35
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_35 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 14278386 - 14278156
Alignment:
| Q |
1 |
aaatcactcaaaaatggctttgtatatcttccttgagactggtcgcttctggtttcctgctcaagtctataaggtatgattagcaatactactaa----- |
95 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14278386 |
aaatcactcaaaaatggctttgtatatcctccttgagactggtcgcttctggtttcctgctcaagtttataaggtatgattagcaatactactaaatact |
14278287 |
T |
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| Q |
96 |
--tgtatttcttttgtatttctaatagctagtaagaatgaagtgatgcttattacattatggattccatcctaagtaagaataactaccaagtatttaat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14278286 |
aatgtatttcttttgtatttctaatagctagtaagaatgaagtgatgcttattacattatggattccatcctaagtaagaataactacaaagtatttaat |
14278187 |
T |
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| Q |
194 |
aacccacatgggtttgcctgatgtattggct |
224 |
Q |
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|||||||||||||| ||||| |||||||||| |
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| T |
14278186 |
aacccacatgggttggcctggtgtattggct |
14278156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 14283855 - 14283685
Alignment:
| Q |
11 |
aaaatggctttgtatatcttccttgagactggtcgcttctggtttcctgctcaagtctataaggtatgattagcaat-actactaatgtatttcttttgt |
109 |
Q |
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||||||||||||||||| |||||||||||| || ||||||| |||||||||||||| ||||||||||||||| | || ||||| || ||||||||||||| |
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| T |
14283855 |
aaaatggctttgtatattttccttgagactagttgcttctgctttcctgctcaagtttataaggtatgattatccataactaccaa-gtatttcttttgt |
14283757 |
T |
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| Q |
110 |
atttctaatagctagtaagaatgaagtgatgcttattacattatggattccatcctaagtaagaataactac |
181 |
Q |
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| T |
14283756 |
acttctactacctagtaagaataaagtgatgcttactaaattgtggattgcatcctaagtaagtagaactac |
14283685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 14258546 - 14258459
Alignment:
| Q |
1 |
aaatcactcaaaaatggctttgtatatcttccttgagactggtcgcttctggtttcctgctcaagtctataaggtatgattagcaata |
88 |
Q |
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|||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |
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| T |
14258546 |
aaatcattcaaaaatgcctttgtatattttccttgagactggtcgcttctggtttcctgctcaagtttataagctatgattatcaata |
14258459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 14258448 - 14258375
Alignment:
| Q |
122 |
tagtaagaatgaagtgatgcttattacattatggattccatcctaagtaagaataactaccaagtatttaataa |
195 |
Q |
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| T |
14258448 |
tagtaagaataaagtgatgcttattaaattgtggattgcatcctaagtaagaataactactatgtatttaataa |
14258375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 3104 - 3291
Alignment:
| Q |
1 |
aaatcactcaaaaatggctttgtatatcttccttgagactggtcgcttctggtttcctgctcaagtctataaggtatgattagcaatactactaatgtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3104 |
aaatcactcaaaaatggctttgtatatcttccttgagactggtcgcttctggtttcctgctcaagtttataaggtatgattagcaatactactaatgtat |
3203 |
T |
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| Q |
101 |
ttcttttgtatttctaatagctagtaagaatgaagtgatgcttattacattatggattccatcctaagtaagaataactaccaagtat |
188 |
Q |
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| T |
3204 |
ttcttttgtatttctaatagctagtaagaatgaagtgatgcttattacattatggattccatcctaagtaagaataactacaaagtat |
3291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 35131337 - 35131250
Alignment:
| Q |
1 |
aaatcactcaaaaatggctttgtatatcttccttgagactggtcgcttctggtttcctgctcaagtctataaggtatgattagcaata |
88 |
Q |
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|||||| |||||||||||| | ||||| || ||||||||||| || |||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
35131337 |
aaatcattcaaaaatggctctatatatttttcttgagactggccgtttctggtttcctgctcaagtttataaggtatgattaacaata |
35131250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 35138645 - 35138564
Alignment:
| Q |
1 |
aaatcactcaaaaatggctttgtatatcttccttgagactggtcgcttctggtttcctgctcaagtctataaggtatgatta |
82 |
Q |
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| T |
35138645 |
aaatcattcaaaaatggctctatatatttttcttgagactggccgtttctggtttcctgctcaagtttataaggtatgatta |
35138564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 35123246 - 35123179
Alignment:
| Q |
9 |
caaaaatggctttgtatatcttccttgagactggtcgcttctggtttcctgctcaagtctataaggta |
76 |
Q |
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| T |
35123246 |
caaaaatgagtttgtttatcgcccttgagactggtcaattctggtttcctgctcaagtttataaggta |
35123179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 12404067 - 12404106
Alignment:
| Q |
33 |
ttgagactggtcgcttctggtttcctgctcaagtctataa |
72 |
Q |
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| T |
12404067 |
ttgaaactggccgcttctggtttcctgctcaagtctataa |
12404106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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