View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_low_36 (Length: 234)
Name: NF9616_low_36
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 22090608 - 22090808
Alignment:
| Q |
23 |
gcactacttaaaaagcaatacatgctacaaatcaacaaaggaaactcaccataaagtctccagcatttattgtgcccatctccattgactggccattatc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22090608 |
gcactacttaaaaagcaatacatgctacaaatcaacaaaggaaactcaccataaagtctccagcatttattgtgcccatctccatcgactggccattatc |
22090707 |
T |
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| Q |
123 |
caaaccaagttgtttcactatgtactcttttgctcggccaatttccttctttgtggcaccattggcaacagagcaaatttctatttgaaatccacaggtt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22090708 |
caaaccaagttgtttcactatgtactcttttgctcggccaatttccttctttgtggcaccattggcaacagagcaaatttctatttgaaatccataggtt |
22090807 |
T |
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| Q |
223 |
c |
223 |
Q |
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| T |
22090808 |
c |
22090808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 36012414 - 36012571
Alignment:
| Q |
59 |
aaaggaaactcaccataaagtctccagcatttattgtgcccatctccattgactg---gccattatccaaaccaagttgtttcactatgtactcttttgc |
155 |
Q |
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|||| ||||||||||||||||| ||||||| ||||| ||||| || | || || |||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
36012414 |
aaagaaaactcaccataaagtccccagcatgaattgttcccatttcaacagattgaccgccattctccaaacccagttgtttcactatgtattcttttgc |
36012513 |
T |
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| Q |
156 |
tcggccaatttccttctttgtggcaccattggcaacagagcaaatttctatttgaaat |
213 |
Q |
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| T |
36012514 |
gcggccaatttccttcttggtggctccattggcaattgagcaaatttctatttgaaat |
36012571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 13609998 - 13609910
Alignment:
| Q |
115 |
ccattatccaaaccaagttgtttcactatgtactcttttgctcggccaatttccttctttgtggcaccattggcaacagagcaaatttc |
203 |
Q |
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||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
13609998 |
ccattctccaaaccaagttgtttcactatgtattcttttgcacggccaatttccttctttgtggctccattggcaaccgagcaaatttc |
13609910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 14075055 - 14074980
Alignment:
| Q |
115 |
ccattatccaaaccaagttgtttcactatgtactcttttgctcggccaatttccttctttgtggcaccattggcaa |
190 |
Q |
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||||| || ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| ||||| |||||||||| |
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| T |
14075055 |
ccattctctaaacccagttgtttcactatgtattcttttgcgcggacaatttccttcttggtggctccattggcaa |
14074980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 14150466 - 14150402
Alignment:
| Q |
115 |
ccattatccaaaccaagttgtttcactatgtactcttttgctcggccaatttccttctttgtggc |
179 |
Q |
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||||| |||||| | |||||||||| ||||| | |||||| ||||||||||||||||| ||||| |
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| T |
14150466 |
ccattctccaaagctagttgtttcatgatgtattgttttgcgcggccaatttccttcttggtggc |
14150402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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