View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_low_4 (Length: 557)
Name: NF9616_low_4
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Complemental strand, 330300 - 329776
Alignment:
| Q |
19 |
taagtgctcttaggttgcaatcaaggtcacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatact |
118 |
Q |
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| T |
330300 |
taagtgctcttaggttgcaatcaaggccacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatact |
330201 |
T |
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| Q |
119 |
tatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcctatcaaattgaaattttgcacattccattgttggta |
218 |
Q |
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| T |
330200 |
tatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcccatcaaattgaaattttgcacattccattactggta |
330101 |
T |
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| Q |
219 |
attcttaatattttatgtaaaatagcaaaatacagagacttgcaatctattggtnnnnnnn-cttcatgttcatgtcatgatagacagataaatagatca |
317 |
Q |
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| T |
330100 |
attcttaatattttatgtaaaatagtaaaatacagagacttgcaatctattggtaaaaaaaactttatgttcatgtcatgatagacagataaatagatca |
330001 |
T |
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| Q |
318 |
tatgcatgaagaagatattgtatgtttgctgcttcgaattgtatgtatatttttcactactcgtactaacttgtttgcgtttgtatattggtgcagttgt |
417 |
Q |
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| T |
330000 |
tatgcatgaagaagatattgtatgtttgctgcttcgaattgtatatatatttttcaccactcgtactaacttgtttgcgtttgtatattggtgcagttgt |
329901 |
T |
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| Q |
418 |
gctgctctctgctgttgctgcctattagatgcctgcttctaagaagactttactctgcactaataggattgaagtgtgtttaagcattgagctcaatgaa |
517 |
Q |
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| T |
329900 |
gctgctctctgctgttgctgcctattagatgcctgcttctaagaagactttactctgcactaataggattgaagtgtgtttaagcattgagctcaatgaa |
329801 |
T |
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| Q |
518 |
aattgtttcatgtttcttttctgtg |
542 |
Q |
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| T |
329800 |
aattgtttcatgtttcttttctgtg |
329776 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 477
Target Start/End: Original strand, 48030582 - 48030662
Alignment:
| Q |
397 |
tttgtatattggtgcagttgtgctgctctctgctgttgctgcctattagatgcctgcttctaagaagactttactctgcac |
477 |
Q |
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| T |
48030582 |
tttgtaaattgttgcagcttggctgctctctgctgttgctgtctcttggatgcatgcttttgagaagacattactttgcac |
48030662 |
T |
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