View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_low_6 (Length: 531)
Name: NF9616_low_6
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 1560101 - 1559587
Alignment:
| Q |
1 |
gtaactacgcattgttaccacaaagtgagaagtagtatcctacccaataacatccaatcacatgtccacagactaatatataccgcatatggcgattgag |
100 |
Q |
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| T |
1560101 |
gtaactacgcattgttaccacaaagtgagaagtagtatcctacccaataacatccaatcacatgtccacagactaatatataccgcatatggcgattgag |
1560002 |
T |
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| Q |
101 |
aggatccaatttcggacacccatagggtatgagttttcactcgatggggcattactatcatgcccaccttacctcattgttattactcttgtgaatgtga |
200 |
Q |
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| T |
1560001 |
aggatccaatttcggacacctatagggtatgagttttcactcgatggggcattactatcatgcccaccttacctcattgttattactcttgtgaatgtga |
1559902 |
T |
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| Q |
201 |
ctcttttcatatgtatgccaaagtaccttgaaatgacttgatattagcttgtaatatttgagttgattgtttataaatcccaatttagtaacttcttaaa |
300 |
Q |
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| T |
1559901 |
ctcttttcatatgtatgccaaagtaccttgaaatgacttgatattagcttgtaatatttgagttgattgtttataaatcccaatttagtaacttcttaaa |
1559802 |
T |
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| Q |
301 |
gatgtttttgggtataatacttctgattttgtggtattaatatgcttgatagttatccaagtctcccacatttgatataactatcattgagtttgcatac |
400 |
Q |
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| T |
1559801 |
gatgtttttgggtataatacttctgattttgtggtattaatatgcttgatagttatccaagtctcccacatttgatataactatcattgactttgcatac |
1559702 |
T |
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| Q |
401 |
aggacaatgacagtcaaataaaaaataattcaatgacaggcaggaaaatgaacgcaattacattcttcttgccttcttggccggagttatacaccggcaa |
500 |
Q |
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| T |
1559701 |
aggacaatgacagtcaaataaaaaataattcaatgacaggcaggaaaatgaacgcaattacattcttcttgccttcttggccggagttatacaccggcaa |
1559602 |
T |
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| Q |
501 |
tcgacctttaccttg |
515 |
Q |
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| T |
1559601 |
tcgacctttaccttg |
1559587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 436
Target Start/End: Complemental strand, 2089999 - 2089585
Alignment:
| Q |
9 |
gcattgttaccacaaagtgagaagtagtatcctacccaataacatccaatcacatgtccacagactaatatataccgcatatggcgattgagaggatcca |
108 |
Q |
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| T |
2089999 |
gcattgttaccacaaagtgagaagtagtatcctacccaaaaatatccaatcacatgttcacacactaatatataccgcatatggtgattgagaggatcca |
2089900 |
T |
|
| Q |
109 |
atttcggacacccatagggtatgagttttcactcgatggggcattactatcatgcccaccttacctcattgttattactcttgtgaatgtgactcttttc |
208 |
Q |
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| T |
2089899 |
atttcggacacccatagggtatgagtttccactcgatggggtgttactatcatgccaaccttacctcgttgttattactcttgagaatgtaactc--ttc |
2089802 |
T |
|
| Q |
209 |
atatgtatgccaaagtaccttgaaatgacttgatattagcttgtaatatttgagttgattgtttataaatcccaatttagtaacttcttaaagatgtttt |
308 |
Q |
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| T |
2089801 |
atatgtataccaaagtaccttgaaatgacttgatattagcttgtaatatttgagttgattgtttataaatcccaatttagcaacttcttaaagatgattt |
2089702 |
T |
|
| Q |
309 |
tgggtataatacttctgattttgtggtattaatatgcttgatagttatccaagtctcccacatttgatataactatcattgagtttgcatacaggacaat |
408 |
Q |
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| T |
2089701 |
cgggta---------tgattttgtggtaata--atgcttggtagttatccaactctcccacatttgatataactatcattgagtttgtatacaggacaat |
2089613 |
T |
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| Q |
409 |
gacagtcaaataaaaaataattcaatga |
436 |
Q |
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|||| |||||||||||||||| |||||| |
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| T |
2089612 |
gacaatcaaataaaaaataatacaatga |
2089585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 511
Target Start/End: Complemental strand, 2089534 - 2089465
Alignment:
| Q |
442 |
aggaaaatgaacgcaattacattcttcttgccttcttggccggagttatacaccggcaatcgacctttac |
511 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||||| | ||||||||| |||||||| |
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| T |
2089534 |
aggaaaatgaactcaattacattcttcatgccttcttggccggagttcaatgccggcaatcaacctttac |
2089465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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