View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9617_low_1 (Length: 554)
Name: NF9617_low_1
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9617_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 22 - 318
Target Start/End: Complemental strand, 413299 - 413018
Alignment:
| Q |
22 |
gtgcaaacaatgaaaactggactcgacacgtatgtatctatatctagaggccagtgttacatcaaattatcattaatggtaagcctgccattttcaagtt |
121 |
Q |
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| T |
413299 |
gtgcaaacaatgaaaactggactcgacacgtatatatctatatctagaggccagtgttacatcaaattatcattaatggtaagcctgccattttcaagtt |
413200 |
T |
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| Q |
122 |
tttctgaaaggatggatatttcttcatcaatactatttagttttagttcactgttcgaatctggatatagatagacagcttttgtcgcaattatagacag |
221 |
Q |
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| T |
413199 |
tttctgaaaggatggatatttcttaatca---ctatt------------actgttcgaatctggatatagataaacagcttttgtcgcaattatagacaa |
413115 |
T |
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| Q |
222 |
caattcatgctccgtacttccgtcatcgatttatgttatacaatttagtactcctaagctaaatcactgcctaattaacttggaggcatatctattt |
318 |
Q |
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| T |
413114 |
caattcatgctccgtacttccgtcatcgatttatgttatacaatttagtcctcttaagctaaatcactgcctaattaacttggaggcatatctattt |
413018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 440 - 540
Target Start/End: Complemental strand, 412121 - 412018
Alignment:
| Q |
440 |
taaagtgaaaactcattttagtccttaacaccgactagaagactcaatttggtcaacgaaatagaactttaagtccatgacaa---aaaaggggacaact |
536 |
Q |
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| T |
412121 |
taaagtgaaaactcattttagtccttaacaacgactagaagactcaatttggtcaacgaaatataactttaagtccatgacaaaaaaaaaggggacaact |
412022 |
T |
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| Q |
537 |
tatc |
540 |
Q |
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|||| |
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| T |
412021 |
tatc |
412018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 412501 - 412473
Alignment:
| Q |
345 |
tatctaattatgatatcttacgagcaagc |
373 |
Q |
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| T |
412501 |
tatctaattatgatatcttacgagcaagc |
412473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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