View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9617_low_11 (Length: 349)

Name: NF9617_low_11
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9617_low_11
NF9617_low_11
[»] chr6 (4 HSPs)
chr6 (162-334)||(27130997-27131171)
chr6 (37-91)||(27131242-27131296)
chr6 (35-79)||(20611779-20611823)
chr6 (35-79)||(2477657-2477701)
[»] chr3 (1 HSPs)
chr3 (35-79)||(28689434-28689478)
[»] chr5 (3 HSPs)
chr5 (35-79)||(36868946-36868990)
chr5 (38-79)||(40794397-40794438)
chr5 (36-80)||(14318454-14318498)
[»] chr1 (1 HSPs)
chr1 (35-79)||(26803945-26803989)
[»] chr8 (2 HSPs)
chr8 (44-79)||(34789935-34789970)
chr8 (35-79)||(5942682-5942726)
[»] scaffold0227 (1 HSPs)
scaffold0227 (38-80)||(16016-16058)
[»] scaffold0007 (1 HSPs)
scaffold0007 (35-79)||(230932-230976)
[»] chr7 (1 HSPs)
chr7 (35-79)||(17800293-17800337)
[»] chr4 (2 HSPs)
chr4 (36-80)||(15735087-15735131)
chr4 (35-79)||(27112021-27112065)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 162 - 334
Target Start/End: Complemental strand, 27131171 - 27130997
Alignment:
Q  162 cagatctcttttcatttacaaagttgagcctctggattcgttggaacgacccagttagggtctagttgtcttttccgtagatgaatattcactgctgcag 261  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27131171 cagatctcttttcatttatagagttgagcctctggattcgttggaacgacccagttagggtctagttgtcttttccgtagatgaatattcactgctgcag 27131072  T
Q  262 tgagaatttatctttgtcctggtatagaaatttgaatgcttggggcccgatta--tataaggacattgagatatt 334  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  27131071 tgagaatttatctttgtcctggtatagaaatttgaattcttggggcccgattatatataaggacattgagatatt 27130997  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 27131296 - 27131242
Alignment:
Q  37 gagggtagtttgaaatttctcatgtatacggtagtgattttcatataggtgggtg 91  Q
    |||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  27131296 gagggttgtttgagatttctcatgtatacgatagtgattttcatgtaggtgggtg 27131242  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 20611779 - 20611823
Alignment:
Q  35 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    |||||||||||||||  || |||||||||||||||||||||||||    
T  20611779 gggagggtagtttgaggttcctcatgtatacggtagtgattttca 20611823  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 2477701 - 2477657
Alignment:
Q  35 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    |||||||| ||||||  || |||||||||||||||||||||||||    
T  2477701 gggagggtggtttgaggttcctcatgtatacggtagtgattttca 2477657  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 28689478 - 28689434
Alignment:
Q  35 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||    
T  28689478 gggagggtagtttgagatttctcatgtatacggcagtgattttca 28689434  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 36868990 - 36868946
Alignment:
Q  35 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||    
T  36868990 gggagggtggtttgagattcctcatgtatacggtagtgattttca 36868946  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 40794438 - 40794397
Alignment:
Q  38 agggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    ||||| ||||||  ||||||||||||||||||||||||||||    
T  40794438 agggtggtttgaggtttctcatgtatacggtagtgattttca 40794397  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 14318498 - 14318454
Alignment:
Q  36 ggagggtagtttgaaatttctcatgtatacggtagtgattttcat 80  Q
    ||||||| ||||||  || ||||||||||||||||||||||||||    
T  14318498 ggagggtggtttgaggttcctcatgtatacggtagtgattttcat 14318454  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 26803945 - 26803989
Alignment:
Q  35 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    |||||||| ||||||  ||||||||||||||||||||||||||||    
T  26803945 gggagggtggtttgaggtttctcatgtatacggtagtgattttca 26803989  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 34789970 - 34789935
Alignment:
Q  44 gtttgaaatttctcatgtatacggtagtgattttca 79  Q
    |||||| |||||||||||||||||||||||||||||    
T  34789970 gtttgatatttctcatgtatacggtagtgattttca 34789935  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 5942682 - 5942726
Alignment:
Q  35 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    |||||||| ||||||  || |||||||||||||||||||||||||    
T  5942682 gggagggtggtttgaggttcctcatgtatacggtagtgattttca 5942726  T

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Target: scaffold0227 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 16016 - 16058
Alignment:
Q  38 agggtagtttgaaatttctcatgtatacggtagtgattttcat 80  Q
    ||||| ||||||  |||||||||||||||||||||||||||||    
T  16016 agggtggtttgaggtttctcatgtatacggtagtgattttcat 16058  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 230976 - 230932
Alignment:
Q  35 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    |||||||| ||||||| || |||||||||| ||||||||||||||    
T  230976 gggagggtggtttgaagttcctcatgtataaggtagtgattttca 230932  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 17800337 - 17800293
Alignment:
Q  35 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    |||| ||| |||||||||| |||||| ||||||||||||||||||    
T  17800337 gggatggtggtttgaaattcctcatgcatacggtagtgattttca 17800293  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 15735087 - 15735131
Alignment:
Q  36 ggagggtagtttgaaatttctcatgtatacggtagtgattttcat 80  Q
    ||||||| ||||||| || ||||||||||||||| ||||||||||    
T  15735087 ggagggtggtttgaagttcctcatgtatacggtaatgattttcat 15735131  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 27112021 - 27112065
Alignment:
Q  35 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 79  Q
    |||||||| ||||||  || |||||||||||||||||||||||||    
T  27112021 gggagggtggtttgaggttcctcatgtatacggtagtgattttca 27112065  T

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