View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9617_low_12 (Length: 345)
Name: NF9617_low_12
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9617_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 43619389 - 43619616
Alignment:
| Q |
13 |
aacacatcgacactattaataatttgaagtgtcgagatacatagcacatcacatgttacttgagctcaaggtgattgtgttttctttgtttttgccttct |
112 |
Q |
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| T |
43619389 |
aacacatcgacactattaataatttgaagtgtcgagatacatagcacatcacatgttacttgagctcaaggtgattgtgttttctttgtttttgccttct |
43619488 |
T |
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| Q |
113 |
tgtaggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcagtaag |
212 |
Q |
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| T |
43619489 |
tgtaggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcggtaag |
43619588 |
T |
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| Q |
213 |
cgagatttaaaattgtggtggtaacagt |
240 |
Q |
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| T |
43619589 |
tgagatttaaaattgtggtggtaacagt |
43619616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 43620223 - 43620319
Alignment:
| Q |
233 |
gtaacagtcacgtcacattttttatgttgtggggaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaac |
329 |
Q |
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| T |
43620223 |
gtaacagtcacgtcacattttttatgttgtggagaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaac |
43620319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 43626809 - 43626898
Alignment:
| Q |
116 |
aggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatg |
205 |
Q |
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| T |
43626809 |
aggctgggatcccaaatggagtgctgaatgtagtacccggatttggtccaactgctggtgctgcaatcagctcacacatggacatagatg |
43626898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 32407745 - 32407657
Alignment:
| Q |
116 |
aggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgat |
204 |
Q |
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| T |
32407745 |
aggctggaattccagatggagtgctcaatgtagtacctggatttggtgcaactgcaggagctgcaataagctcacacatggacattgat |
32407657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 32434075 - 32434171
Alignment:
| Q |
115 |
taggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcagtaa |
211 |
Q |
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| T |
32434075 |
taggctggtattccagatggagtgctcaatgtactgccaggatttggttcaactgctggagctgcaataacctcacatatggacattgatgcagtaa |
32434171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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