View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9617_low_13 (Length: 297)
Name: NF9617_low_13
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9617_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 38846401 - 38846672
Alignment:
| Q |
17 |
agtactatatgttgaagttggtaaagccaccatttcttttttcttgattccggaattcaacctcctagaagcaatccattgcataggctcagtaactaca |
116 |
Q |
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| T |
38846401 |
agtactaaatgttgaagttggtaaagccaccatttcttttttcttgattccggaattcaacctcctagaagcaatccattgcataggctcagtaactaca |
38846500 |
T |
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| Q |
117 |
cgaccaagacattgaaaagcacattgtaacattgtgttaagaccaagagcacaaacaatggcacataaaatggctgctacaagaaccatccaatcaaaac |
216 |
Q |
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| T |
38846501 |
cgaccaagacattgaaaagcacattgtaacattgtgttaagaccaagagcacaaacaatggcacataaaatggctgctacaagaaccatccaatcaaaac |
38846600 |
T |
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| Q |
217 |
cagctacttgttcatgatcatggtgcttgttgtcacatggtatgggagattgagagtgagaatgagaattat |
288 |
Q |
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| T |
38846601 |
cagctacttgttcatgatcatggtgcttgttgtcacatggtatgggagattgagagtgagaatgagaattat |
38846672 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 15185059 - 15184882
Alignment:
| Q |
28 |
ttgaagttggtaaagccaccatttcttttttcttgattccggaattcaacctcctagaagcaatccattgcataggctcagtaactacacgaccaagaca |
127 |
Q |
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|||| ||||| ||||| ||||||||||| ||||||| ||||||||| || | || |||||||||||| | ||| ||||||| ||||| ||| |
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| T |
15185059 |
ttgatgttggcaaagcaaccatttctttcttcttgagtccggaattgcgtcttcgagtagcaatccattgtagaggttcagtaaggacacggttggcaca |
15184960 |
T |
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| Q |
128 |
ttgaaaagcacattgtaacattgtgttaagaccaagagcacaaacaatggcacataaaatggctgctacaagaaccat |
205 |
Q |
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| T |
15184959 |
ttggaatacacattgtaacattgtgttgaggccaagagcacaaagtaaagcacatactatagctgctacaagaaccat |
15184882 |
T |
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