View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9617_low_14 (Length: 290)
Name: NF9617_low_14
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9617_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 18604685 - 18604958
Alignment:
| Q |
1 |
aatattatcaattagataaatctcaaattgttctatataccttcaagcacttgacaatgatattttaatacattataaattcaaaagattataatctaaa |
100 |
Q |
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| T |
18604685 |
aatattatcaattagataaatctcaaattgttccatataccttcaagcacttgacaatgatatcttaatacattataaattcaaaagattataatctaaa |
18604784 |
T |
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| Q |
101 |
tgattaaaaacatgaagtctaccaaatgttaatgtagactttcaaaatatatccaagtgttatagctaatagttaacttatctcattacaataaacaaga |
200 |
Q |
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| T |
18604785 |
tgattaagaacatgaagtctac-aaatgttaatgtagactttcaaaatatatccaagtgttataactaatagttaacttatctcattacaataaacaaga |
18604883 |
T |
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| Q |
201 |
cataatcttccatctttccatgcttgaataaaggtaggtcttcatcaaattcttcaagttgaatatcatgaaagt |
275 |
Q |
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| T |
18604884 |
cataatcttccatctttccatgcttgaataaaggtaggtcttcatcaaattcttcaagttgaatatcatgaaagt |
18604958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4956827 - 4956901
Alignment:
| Q |
1 |
aatattatcaattagataaatctca-aat-tgttctatataccttcaagcacttgacaatgatattttaatacatt |
74 |
Q |
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| T |
4956827 |
aatattatcaattagataattctcataatatgttc-atatatcttcaagtacttgacaatgatatcttaatacatt |
4956901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 4956908 - 4956984
Alignment:
| Q |
103 |
attaaaaacatgaagtctaccaaatgttaatgtagactttcaaaatatatccaagtgttatagctaatagttaactt |
179 |
Q |
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||||| ||||||| | ||| |||||||||||| ||||||||||||| ||| ||| ||||||| ||||| ||||||| |
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| T |
4956908 |
attaataacatgatttgtacaaaatgttaatgtcgactttcaaaatacatcaaagcgttatagttaataattaactt |
4956984 |
T |
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