View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9617_low_17 (Length: 249)
Name: NF9617_low_17
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9617_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33784776 - 33784552
Alignment:
| Q |
1 |
ttgaaagatggatatgaaactgaatgtggagaaaggggggttcaattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatc |
100 |
Q |
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| T |
33784776 |
ttgaaagatggatatgaaactgaatgtggagaaaggggggttcaattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatc |
33784677 |
T |
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| Q |
101 |
caatcatacttctactagatgaagcaacaagtgctttggatgtgcaatcagaacaagttgtgcaagaagcacttgataggattatggtaggaagaactac |
200 |
Q |
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| T |
33784676 |
caatcatacttctactagatgaagcaacaagtgctttggatgtgcaatcagaacaagttgtgcaagaagcacttgataggattatggtaggaagaactac |
33784577 |
T |
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| Q |
201 |
cattgttgtggcacatagacttaac |
225 |
Q |
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| T |
33784576 |
cattgttgtggcacatagacttaac |
33784552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 33788455 - 33788370
Alignment:
| Q |
49 |
tcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgc |
134 |
Q |
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| T |
33788455 |
tcaggaggacaaaagcaaagaatagccattgcaagagctatcataaaaaatccagtaattcttctgcttgatgaagcaactagtgc |
33788370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 3431274 - 3431179
Alignment:
| Q |
40 |
gttcaattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgct |
135 |
Q |
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| T |
3431274 |
gttcaattatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaatccaaagatccttctcttagacgaagcaactagtgct |
3431179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 2571745 - 2571696
Alignment:
| Q |
34 |
aggggggttcaattatcaggaggacaaaagcaaagaatagcaattgcaag |
83 |
Q |
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| T |
2571745 |
aggggagttcaaatgtcagggggacaaaagcaaagaattgcaattgcaag |
2571696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 27810409 - 27810500
Alignment:
| Q |
43 |
caattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgc |
134 |
Q |
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| T |
27810409 |
caattatcaggaggacaaaagcagagaatagcaattgcaagggcaatgctgaaaaatccagcaattcttctcctagatgaggctacaagtgc |
27810500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 5823515 - 5823602
Alignment:
| Q |
55 |
ggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatg |
142 |
Q |
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| T |
5823515 |
ggacaaaagcaaagaattgcaattgcaagggccatattgaagaatccaagaatccttcttcttgatgaagcaacaagtgcattggatg |
5823602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 5832085 - 5831998
Alignment:
| Q |
55 |
ggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatg |
142 |
Q |
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| T |
5832085 |
ggacaaaagcaaagaattgcaattgcaagggcaatattgaagaacccaaaaatccttcttcttgatgaagcaacaagtgcattggatg |
5831998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 5766122 - 5766209
Alignment:
| Q |
55 |
ggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatg |
142 |
Q |
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| T |
5766122 |
ggacaaaagcaaagaattgcaattgctagggcaatattgaagaacccaagaatccttcttctcgatgaagcaacaagtgcattggatg |
5766209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 17872443 - 17872391
Alignment:
| Q |
28 |
ggagaaaggggggttcaattatcaggaggacaaaagcaaagaatagcaattgc |
80 |
Q |
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| T |
17872443 |
ggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 41176907 - 41176783
Alignment:
| Q |
52 |
ggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttgga-tgtgcaatca |
150 |
Q |
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| T |
41176907 |
ggaggacaaaaacaaagaatagcaatagcaagggcaatgctaaaaaatccagcaattcttctcctcgatgaggcaacaagtgcattggactctg-aatca |
41176809 |
T |
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| Q |
151 |
gaacaagttgtgcaagaagcacttga |
176 |
Q |
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| T |
41176808 |
gaaaagctggtgcaagaagcacttga |
41176783 |
T |
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