View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9617_low_21 (Length: 247)
Name: NF9617_low_21
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9617_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32723436 - 32723681
Alignment:
| Q |
1 |
ttcatagaaaaataccaatcgttaaagcacaagacccattactcattagtcaaagttagcctgagaatccgcgacgaatctaggatgagtaagattagtg |
100 |
Q |
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| T |
32723436 |
ttcatagaaaaataccaatcgttaaagcacaagacccattactcattagtcaaagttagcctgagaatccgcgacgaatctaggatgagtaagattagtg |
32723535 |
T |
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| Q |
101 |
g----attgttgattgaggaagaaagaaatcagtttgttggattgatta--------------tgtttcatgtggaattatcatgagttgtccacttggg |
182 |
Q |
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| T |
32723536 |
gattaattgttgattgaggaagaaagaaatcagtttgttggattgattatgttttacagagattgtttcatgtggaattatcatgagttgtccacttggg |
32723635 |
T |
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| Q |
183 |
ctagataaattagtcaaccacatgctcccatttatagaagaatgtaa |
229 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
32723636 |
ctagat-aattagtcaaccagatgctcccatttatagaagaatgtaa |
32723681 |
T |
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