View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9617_low_3 (Length: 411)
Name: NF9617_low_3
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9617_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 32723364 - 32723151
Alignment:
| Q |
1 |
ccttcactttcatcaccttagaacataatgtctaacactcttgattcgacttccagtgtccccagtcaatccaacaagtcccttaactctagcggtgaat |
100 |
Q |
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| T |
32723364 |
ccttcactttcatcacctaagaacataatgtctaacactcttgattcgacttccagtgtccccagtcaatccaacaagtcccttaactctagcggtgaat |
32723265 |
T |
|
| Q |
101 |
attttgatttagaacctgatcaaaagttcgaaggtcgtccataatttttaattgaagaaaatctaaagagtgttaaatacatttgttttgaggtgtttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32723264 |
attttgatttagaacctgatcaaaagttcgaaggtcgtccataatttttaattgaagaaaatctaaagagtgttaaatacatttgttttgaggtgtttaa |
32723165 |
T |
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| Q |
201 |
gccactgaactaac |
214 |
Q |
| |
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|||||||||||||| |
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| T |
32723164 |
gccactgaactaac |
32723151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 274 - 401
Target Start/End: Complemental strand, 32723091 - 32722964
Alignment:
| Q |
274 |
gctagtttaattgattttgtgtctaaattttttaaaagttcaatatttatagaccaacacttatccatacttgccaaaacggataatgtgtgaatgctcc |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
32723091 |
gctagtttaattgattttgtgtctaaattttttaaaagttcaatatttatagaccaacacttatccatacttgccaaaacggataatgcgtgagtgctcc |
32722992 |
T |
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| Q |
374 |
cattgtaggggatacatgacgccctatg |
401 |
Q |
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| ||| |||||||||||||||||||||| |
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| T |
32722991 |
cgttgcaggggatacatgacgccctatg |
32722964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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