View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9617_low_4 (Length: 389)

Name: NF9617_low_4
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9617_low_4
NF9617_low_4
[»] chr6 (1 HSPs)
chr6 (1-389)||(33784762-33785150)


Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 33785150 - 33784762
Alignment:
Q  1 tgtcatacctagttcgttggttggtttgattgcgatttaaccaattgaaccatgacctgaaagtctcgctgatttgattttcgatccgatttttaaaaca 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33785150 tgtcatacctagttcgttggttggtttgatcgcgatttaaccaattgaaccatgacctgaaagtctcgctgatttgattttcgatccgatttttaaaaca 33785051  T
Q  101 ttgatatgaaccaactcaaagtaactagacatgtaggcattgtttccatgcatcacattacatttgacctataataagaaactttaagtaatactagtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33785050 ttgatatgaaccaactcaaagtaactagacatgtaggcattgtttccatgcatcacattacatttgacctataataagaaactttaagtaatactagtaa 33784951  T
Q  201 ttactgaattttaaaatcaatagttaatctattcatgacttgatgctataatttattgaataagattgtattatcaagaagataaattagtaactagaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33784950 ttactgaattttaaaatcaatagttaatctattcatgacttcatgctataatttattgaataagattgtattatcaagaagataaattagtaactagaat 33784851  T
Q  301 gatgctaacaaacattattatgattaatgctgaattaaaaatgtgcacattttcaattttggtgatgcagatcattgaaagatggatat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33784850 gatgctaacaaacattattatgattaatgctgaattaaaaatgtgcacattttcaattttggtgatgcagatcattgaaagatggatat 33784762  T

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