View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9617_low_6 (Length: 382)
Name: NF9617_low_6
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9617_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 42460444 - 42460633
Alignment:
| Q |
1 |
aaaaagaggtgggtagaagtctcaacacaccttccacacaaaacacaaagtaaggacgcacccgaatccaaaatgtgacgaaaagcgagattatccttcg |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
42460444 |
aaaaagaggtgggtagaagtctcaacacacattccacacaaaacacaaagtaaggacgcactcgaatccaaaatgtgacgaaatgcgagattatccttcg |
42460543 |
T |
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| Q |
101 |
taggaatgcgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaatcaaggtgaacaccccctcat |
190 |
Q |
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| T |
42460544 |
taggaatgcaatcaaggagtagtgcccaagagaacgtcactactttggaaggagccggactcttccaaatcgaggagaacaccccctcat |
42460633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 9936134 - 9935949
Alignment:
| Q |
4 |
aagaggtgggtagaagtctcaacacaccttccacacaaaacacaaagtaaggacgcacccgaatccaaaatgtgacgaaaagcgagattatccttcgtag |
103 |
Q |
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| T |
9936134 |
aagagatgggtagaagtctcaacacaccttccacacaaa-cacaaagtaaggacacacccgaatccaaggtatgtcgagatgcaagattatccttcgtag |
9936036 |
T |
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| Q |
104 |
gaatgcgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaatcaaggtgaacaccccctcat |
190 |
Q |
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| T |
9936035 |
gaatacgatcaagaagtagggaccaatagaatgtgactactttggaaggagccggactcttccaaatcgaggagaaaaccccctcat |
9935949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 1479802 - 1479958
Alignment:
| Q |
13 |
gtagaagtctcaacacaccttccacacaaaacacaaagtaaggacgcacccgaatccaaaatgtgacgaaaagcgagattatccttcgtaggaatgcgat |
112 |
Q |
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| T |
1479802 |
gtagatgtctcaacttccctcccacacaaaacacaaagtaaggatgcacccgggtcaaggatatggcgaatggctagacttttcctcgtaggaatgcgat |
1479901 |
T |
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| Q |
113 |
caagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaa |
169 |
Q |
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| T |
1479902 |
caagtaataacaaccaagagaaggccactactttggaaggagccgaactcttccaaa |
1479958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 2281983 - 2281794
Alignment:
| Q |
1 |
aaaaagaggtgggtagaagtctcaacacaccttccacacaaaacacaaagtaaggacgcacccgaatccaaaatgtgacgaaaagcgagattatccttcg |
100 |
Q |
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||||||||||| |||| ||||| ||| ||||||||||||| ||||||| ||||| || ||| ||| | || ||||| || || ||||||||| | | |
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| T |
2281983 |
aaaaagaggtgagtaggcgtctcggcactccttccacacaaagcacaaagcaaggaagctcccagatcgagtatatgacggaatgcaagattatcccttg |
2281884 |
T |
|
| Q |
101 |
taggaatgcgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaatcaaggtgaacaccccctcat |
190 |
Q |
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| T |
2281883 |
ttggaatacgcccaaggagaagagaccaagagaacaccactactttggatggagtcggactcttccaaagcaaggagaaaaccccctcat |
2281794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 1033915 - 1033872
Alignment:
| Q |
126 |
ccaagagaacgccgctactttggaaggagccggactcttccaaa |
169 |
Q |
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| T |
1033915 |
ccaagagaacgccacaactttggaaggagccggactcttccaaa |
1033872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 2921387 - 2921448
Alignment:
| Q |
109 |
cgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaat |
170 |
Q |
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| T |
2921387 |
cgatcaagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaat |
2921448 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 36988698 - 36988601
Alignment:
| Q |
73 |
atgtgacgaaaagcgagattatccttcgtaggaatgcgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaat |
170 |
Q |
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| T |
36988698 |
atgtggcgaatagcgagattatcttttgtagggattcgatcaaggagtaaggaccacgagaacgccaccactttcgatggagccggactcttccaaat |
36988601 |
T |
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