View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9617_low_8 (Length: 370)
Name: NF9617_low_8
Description: NF9617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9617_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 41 - 360
Target Start/End: Original strand, 10739555 - 10739873
Alignment:
| Q |
41 |
cacaagctccaattagttttagtgaacaaaaacagttataactaactttctagtttgttatgaagtttgttattatcttataagatggaacttacaatag |
140 |
Q |
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| T |
10739555 |
cacaagctccaattagttttagtaaacaaaaacagttataactaactttctagtttgttatgaagtttgttgttatcttataagatggaacttacaatag |
10739654 |
T |
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| Q |
141 |
cttagtgtataccatcatagaagtactataaatacatgcaataccttcattctcaagtaatcaataataatattgattctagcttctacattttatctcc |
240 |
Q |
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| T |
10739655 |
cttagtgtataccatcatagaagtactataaatacatgcaataccttcattctcaagtaatcaataataatattgattctagcttctacattttatctcc |
10739754 |
T |
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| Q |
241 |
ttttctcttattttccataattttctatcactttttagtttatcaacatggcatcatgagcctcttgatctaagagtgcttcttccgcacattttctttc |
340 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10739755 |
ttttctcttattttccataattttctatcaatttttagcttatcaacatggcatcatgagcatcttgatctaagagtgcttcttccgcacattttcttt- |
10739853 |
T |
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| Q |
341 |
gttttcctttcctttctctg |
360 |
Q |
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|||||||||||||||||||| |
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| T |
10739854 |
gttttcctttcctttctctg |
10739873 |
T |
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