View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9618_high_1 (Length: 289)
Name: NF9618_high_1
Description: NF9618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9618_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 14782755 - 14783019
Alignment:
| Q |
9 |
agcaaaggtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaattgatagggtta |
108 |
Q |
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| T |
14782755 |
agcaaaagtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaattgatagggtta |
14782854 |
T |
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| Q |
109 |
acatttttggtgtgaaatcagtgaaagggtttcttttggtgagattgaagagataagggagaaaaattgggatgatcaagagagggaagccagcacattg |
208 |
Q |
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| T |
14782855 |
acattttcggtgtgaaatcagtgaaagggtttcttttggtgagattgaagagataagggagaaaaattgggatgatcaagagagggaagccagcacattg |
14782954 |
T |
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| Q |
209 |
aacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttg |
273 |
Q |
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| T |
14782955 |
aacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttg |
14783019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 14775077 - 14775145
Alignment:
| Q |
205 |
attgaacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttg |
273 |
Q |
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| T |
14775077 |
attgaacccaagttgaaacccatctactagaacctttatggataaaatagtactttgagagtaaacttg |
14775145 |
T |
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