View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9618_high_3 (Length: 218)
Name: NF9618_high_3
Description: NF9618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9618_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 883422 - 883200
Alignment:
| Q |
1 |
taggccatcatctttgcttctccatctccaatcttcattcctttcacaacactctcaaggtacttctcttttcttttcaattttcatccactgttgttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
883422 |
taggccatcatctttgcttctccatctccaatcttcattcctttcacaacactctcaaggtacttctcttttcttttcaattttcatccactgttgttag |
883323 |
T |
|
| Q |
101 |
atttgtgttttgctagatattactatatatgtgttata---atttcacaag-------nnnnnnnnnncatttacagaacaagggtattgagacttttga |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
883322 |
atttgtgttttgctagatattactatatatgtgttataattatttcacaagtttttttttttttttttcatttacaggacaagggtattgagacttttga |
883223 |
T |
|
| Q |
191 |
gactactaatggcaacaccaaac |
213 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
883222 |
gactactaatggcaacatcaaac |
883200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University