View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9618_low_1 (Length: 395)
Name: NF9618_low_1
Description: NF9618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9618_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 52209353 - 52209725
Alignment:
| Q |
17 |
aatacacggtagtggatatagcaatattgtactttccttgttttccacacaacattgctttcttatcaaacagttttatcaaatttgacagtagataagg |
116 |
Q |
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| T |
52209353 |
aatacacggtagtggatatagcaatattgtactttccttgttttccacacaatattgctttcttatcaaacagtttgatcaaatttgacagtagataagg |
52209452 |
T |
|
| Q |
117 |
ctaacatgcagaagaggcagctgtgtaagactgctcaatgtaacaaagaagtcagttttatcatctactctatatgtcacaagtttaatggacattagcc |
216 |
Q |
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| T |
52209453 |
ctaacatgcagaagaggcagctgtgtaagactgctcaatgtaacaaag---tcagttttatcatctactctatatgtcacaagtttaatggacattagcc |
52209549 |
T |
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| Q |
217 |
ttcctcattctgcacttataattttaacataatttccttcaatttttaatattttaaaggtctactctggggaagaactttggttcatttgtttcaaaca |
316 |
Q |
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| T |
52209550 |
ttcctcattctgcacttataattttaacataatttccttcaatttttaatattttaaaggtctactctggggaagaactttggttcatttgtttcaaaca |
52209649 |
T |
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| Q |
317 |
atctatacaatatttaatcttaagaaaaagattttgagctttcaactttgtcaatcaaggccacaccaccatagtc |
392 |
Q |
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| T |
52209650 |
atctatacaatatttaatcttaagaaaaagattttgagctttcaactttgtcaatcaaggccacactaccatagtc |
52209725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 57 - 392
Target Start/End: Complemental strand, 27605163 - 27604829
Alignment:
| Q |
57 |
ttttccacacaacattgctttcttatcaaacagttttatcaaatttgacagtagataaggctaacatgcagaagaggcagctgtgtaagactgctcaatg |
156 |
Q |
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| T |
27605163 |
ttttccacacaacatttctttcttatcaaacaattgaatcaaatttgacagtggataaggctaacatgcagaagaggcagctgtgtgagactattcaatg |
27605064 |
T |
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| Q |
157 |
taacaaagaagtcagttttatcatctactctatatgtcacaagtttaatggacattagccttcctcattctgcacttataattttaacataatttccttc |
256 |
Q |
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| T |
27605063 |
caacaaagaagtcacctttatcatgtactctatatgtcaaaagttcaatagagactagccttcctcattctgcacttataattttaacataatttcctcc |
27604964 |
T |
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| Q |
257 |
aatttttaatattttaaaggtctactctggggaagaactttggttcatttgtttcaaacaatctatacaatatttaatcttaagaaaaagattttgagct |
356 |
Q |
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| T |
27604963 |
gatttttaatattttaaaggtctaatctgggaaagaattttggttaatttgtttcaaacaatctgtataatatttaatcttaa-aaaaggatttcgagct |
27604865 |
T |
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| Q |
357 |
ttcaactttgtcaatcaaggccacaccaccatagtc |
392 |
Q |
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| T |
27604864 |
ttcagctttgccaatcagggtcacactaccatagtc |
27604829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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