View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9618_low_2 (Length: 358)
Name: NF9618_low_2
Description: NF9618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9618_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 30257610 - 30257941
Alignment:
| Q |
9 |
tgagatggacatcattttacatgaagagcttgaatcagataaaaatcaaaaacggagacgttctaagtccataatttggaagccattggaactgtctgaa |
108 |
Q |
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| T |
30257610 |
tgagaaggacattcttttacatgaagagcttgaatcagataaaaatcgaaaacggagacgttctaagtccataatttggaagccattggaactgtctgaa |
30257709 |
T |
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| Q |
109 |
gttggattctgtcctgaagttattgatgagtatgcacttggatgtaggagcaagacggttcgggagcttttgaagacgaaagtaagaaaacatcttgttt |
208 |
Q |
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| T |
30257710 |
gttgaattctgtcctgaagttattgatgagtatgcacttggatgtaggagcaagacggttcgggagcttttgaagacgaaagtaagaaaacatcttgttt |
30257809 |
T |
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| Q |
209 |
atcttggatggacaattgaatggaccgaaaacaatactcctccacatagacgataccggtacaagtctccggataaacttaatccaaagttttacacttc |
308 |
Q |
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| T |
30257810 |
atcttggatggacaattgaatggaccgaaaacaatactcctccacatagacgataccggtacaagtctccggataaacttaatccaaagttttacacttc |
30257909 |
T |
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| Q |
309 |
catttttcaagttactaaaattttgcaagagg |
340 |
Q |
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| T |
30257910 |
catttttcaagttactaaaattttgcaagagg |
30257941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 30257558 - 30257593
Alignment:
| Q |
23 |
ttttacatgaagagcttgaatcagataaaaatcaaa |
58 |
Q |
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| T |
30257558 |
ttttacatgaagagcttgaatcagataaaaatcaaa |
30257593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 30257492 - 30257527
Alignment:
| Q |
23 |
ttttacatgaagagcttgaatcagataaaaatcaaa |
58 |
Q |
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| T |
30257492 |
ttttacatgaagagcttgaatcagataaaagtcaaa |
30257527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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