View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9618_low_8 (Length: 219)
Name: NF9618_low_8
Description: NF9618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9618_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 22364730 - 22364920
Alignment:
| Q |
17 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
22364730 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttcaaggttcatgcattca |
22364829 |
T |
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| Q |
117 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatg |
207 |
Q |
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| T |
22364830 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatg |
22364920 |
T |
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Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 30048848 - 30049038
Alignment:
| Q |
17 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| |
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| T |
30048848 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
30048947 |
T |
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| Q |
117 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatg |
207 |
Q |
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| T |
30048948 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatg |
30049038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 7161205 - 7161395
Alignment:
| Q |
17 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| | ||||||||||||||||||||||| |
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| T |
7161205 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagactagatttgatgttctctactagtttgctttcaaggttcatgcattca |
7161304 |
T |
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| Q |
117 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatg |
207 |
Q |
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| T |
7161305 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatg |
7161395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 197167 - 196977
Alignment:
| Q |
17 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| |
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| T |
197167 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
197068 |
T |
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| Q |
117 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatg |
207 |
Q |
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| T |
197067 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatg |
196977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 3945102 - 3945291
Alignment:
| Q |
17 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| |
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| T |
3945102 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
3945201 |
T |
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| Q |
117 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgat |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |
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| T |
3945202 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
3945291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 39950328 - 39950138
Alignment:
| Q |
17 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
116 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| |
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| T |
39950328 |
tactcaatataggagtttgataggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
39950229 |
T |
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| Q |
117 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |
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| T |
39950228 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatg |
39950138 |
T |
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