View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9619_high_3 (Length: 407)
Name: NF9619_high_3
Description: NF9619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9619_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 142 - 389
Target Start/End: Complemental strand, 1909672 - 1909424
Alignment:
| Q |
142 |
atcacctaaaacaccaccaactacatgttatcacaccataattttatctccctccctcattcttcatgtattagatacggcttttgaagtcatgcatctc |
241 |
Q |
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| T |
1909672 |
atcacctaaaacaccaccaactacatgttatcacaccataattttatctccctccctcattcttcatgtattagatacggcttttgaagtcatgcatctc |
1909573 |
T |
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| Q |
242 |
atatgcgaacgaatactatatatgttatagttgtataaagttagtgtaaacttaacccttacatacctttatgtact-tattcatcgattttctatcaaa |
340 |
Q |
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| T |
1909572 |
atatgcgaatgaatactatatatgttatagttgtataaagttagtgtaaacttaacccttacatacctttatgtactatattcatcgattttctatcaaa |
1909473 |
T |
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| Q |
341 |
caannnnnnnatataatcgcataaattttataatatgttccattgtctt |
389 |
Q |
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| T |
1909472 |
caatttttttatataattgcataaattttataatatgttccattgtctt |
1909424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 1909825 - 1909693
Alignment:
| Q |
14 |
attattctccttcattgaactaaatttgattattggagtcgtacatattaatcaccaacaccatcaactacatggcccaatccgccgacatatatcaacc |
113 |
Q |
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| T |
1909825 |
attattctccttcattgaactaaatttgattattggagtcgtacatattaatcaccaacaccatcaactacatggcccactccgccgacatatatcaacc |
1909726 |
T |
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| Q |
114 |
atatttttcatgtaaaatcatagtaaatatcac |
146 |
Q |
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| T |
1909725 |
atatttttcatgtaaaatcatagtaaatatcac |
1909693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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