View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9619_high_4 (Length: 387)
Name: NF9619_high_4
Description: NF9619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9619_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 6442861 - 6442502
Alignment:
| Q |
6 |
agaatctgggtagaaagagtgattgttgggattgggaatggcgtgtaagttacgggcacgtgttagagacgatgagaaaaattgatcttattaccctcac |
105 |
Q |
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| T |
6442861 |
agaatctgggttgaaagagtgattgttgggattggcaatggcgtgtaagttacgggcacgtgttagagacgatgagaaaaattgatcttattaccctcac |
6442762 |
T |
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| Q |
106 |
cccatgtgagaagagtcttccaattttggaactaaatctaccaaatccactctactttcaccaagtacaacaaaatcagtacatgagtgaaaaatggggg |
205 |
Q |
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| T |
6442761 |
cccatgtgagaagagtcttccaattttggaactaaatctaccaaatccactctactttcaccaagtacaacaaaatcagtacatgagtgaaaaatggggg |
6442662 |
T |
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| Q |
206 |
aatatttgttattgtatataaacaaatacataaagatgaaactatttggtagaattttgatcaatcagcattcaaaattctagaaattcaac-----tgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |
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| T |
6442661 |
aatatttgttattgtatataaacaaatacataaagatgaaactatttggtagaattttgatcaatcagaattc-aaattctagaaattcaactgttttgt |
6442563 |
T |
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| Q |
301 |
tttgtttaatttaatttgtcactgtaaactgctgcaaaagtgagaggagaagaattatcta |
361 |
Q |
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| T |
6442562 |
tttgtttaatttaatttgtcactataaactgctgcaaaagtgagaggagaagaataatcta |
6442502 |
T |
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