View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9619_low_11 (Length: 382)
Name: NF9619_low_11
Description: NF9619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9619_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 34908505 - 34908210
Alignment:
| Q |
17 |
agatacaatgtagttaatggttgggatttacttcccaacctgtcatgctttttacaaaaccagttgtcattgttctataggaattacatataaatgatca |
116 |
Q |
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| T |
34908505 |
agatataatgtagttaatggttgggatttacttcccaacctgtcatgctgtttacaaaaccagttgtcattgttctataggaattacatataaatgatcg |
34908406 |
T |
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| Q |
117 |
attaaagattcctacgacatccaccacctccaccaagcccaagcatgttaggcagggttgtttgtgatgataaataaatttcagtaaagtacaaccatcc |
216 |
Q |
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| T |
34908405 |
attaaagattcctacgacatccaccacctccaccaagcccaagcctgttaggcagggttatttgtgatgataaataaatttcagtaaagtacaaccatcc |
34908306 |
T |
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| Q |
217 |
ctcctactagtggttaaatattaaacaagccgttgtaaaccnnnnnnntgaaaattgtttgtatgaaatatgattgtatcatttaaacattaaaaa |
312 |
Q |
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| T |
34908305 |
ctcctactagtggttaaatattaaacaagccgttgtaaaccaagaaaatgaaaattgtttgtatgaaatatgattgtatcatttaaacattaaaaa |
34908210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 34908130 - 34908079
Alignment:
| Q |
331 |
tctgagcttttgggagggttgatccttgacaaggtatcagttaaatttggcc |
382 |
Q |
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| T |
34908130 |
tctgagcttttgggagggttgatccttgacaaggtatcagttaaatttggcc |
34908079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 34894584 - 34894544
Alignment:
| Q |
73 |
aaaccagttgtcattgttctataggaattacatataaatga |
113 |
Q |
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| T |
34894584 |
aaaccagttgtcattgttctatagtaattgcctataaatga |
34894544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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