View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9619_low_13 (Length: 354)
Name: NF9619_low_13
Description: NF9619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9619_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 48 - 336
Target Start/End: Original strand, 28923280 - 28923578
Alignment:
| Q |
48 |
cctggtggttccatcaaaaagaggtggtggttgtgaagttgaagttaacggaggagggagaactggtttgacaccactggtaattagaaagagagaagaa |
147 |
Q |
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| T |
28923280 |
cctggtggttccatcaaaaagaggtggtggttgtgaagttgaagttaacggaggagggagaactggtttgacaccactggtaattagaaagagagaagaa |
28923379 |
T |
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| Q |
148 |
gagtgttagttattagaaacaaaaatggtagaaaagtgaattgtaaaaacagagagttttatttcatacatagtggcca-----ttgatttgatgttgtt |
242 |
Q |
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| T |
28923380 |
gagtgttagttattagaaacaaaaatggtagaaaagtgaattgtaaaaacagagagttttatttcatacatagtggccattgatttgatttgatgttgtt |
28923479 |
T |
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| Q |
243 |
ccttcacagagtctgagtctg-----atctaatgtaaataatatgattcgagtgaattatcttagcctttt-gttttatagacgtggttggtgagtgatc |
336 |
Q |
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| T |
28923480 |
cctttacagagtctgagtctgatctaatctaatgtaaataatatgattcgagtgaattatc-tagccttttctttttatagacgtggttggtgagtgatc |
28923578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 28910851 - 28910896
Alignment:
| Q |
52 |
gtggttccatcaaaaagaggtggtggttgtgaagttgaagttaacg |
97 |
Q |
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| T |
28910851 |
gtggttccatcaaaaagaggtggttgttccgaagttgaagttaacg |
28910896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 28916162 - 28916204
Alignment:
| Q |
48 |
cctggtggttccatcaaaaagaggtggtggttgtgaagttgaa |
90 |
Q |
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| T |
28916162 |
cctggtggttccatcaaaaagaggaggttgttctgaagttgaa |
28916204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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