View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9619_low_14 (Length: 337)
Name: NF9619_low_14
Description: NF9619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9619_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 294966 - 294658
Alignment:
| Q |
19 |
gtgttcttattggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttgaagactggtgattttct |
118 |
Q |
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| T |
294966 |
gtgttcttattggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaacttgaagactggtgattttct |
294867 |
T |
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| Q |
119 |
tgttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgaggaggaaaagagaggaaga |
218 |
Q |
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| T |
294866 |
tgttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgaggaggacaagagaggaaga |
294767 |
T |
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| Q |
219 |
tccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaacccctttcttgttgtctaaataaaattgaatt |
318 |
Q |
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| T |
294766 |
tccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaaccccttacttgttgtctaaataaaattgaatt |
294667 |
T |
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| Q |
319 |
ttagtataa |
327 |
Q |
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| T |
294666 |
ttagtataa |
294658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 27490727 - 27490881
Alignment:
| Q |
19 |
gtgttcttattggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttgaagactggtgattttct |
118 |
Q |
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|||||||||||||||| |||||||| |||||||| ||||| | ||| ||| ||| || | | |||||||||||||||||||||||| ||||||| || |
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| T |
27490727 |
gtgttcttattggtgctattgatgcataccttttggctccaatgcaatttgttttggatagtttatctggaaggagaaatttgaagaggagtgattt-ct |
27490825 |
T |
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| Q |
119 |
tg-ttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttg |
173 |
Q |
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| T |
27490826 |
tgattggtggtaagataggagaagggtcatttggtgttgtttattctgctgttttg |
27490881 |
T |
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