View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9619_low_16 (Length: 308)
Name: NF9619_low_16
Description: NF9619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9619_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 39731942 - 39731887
Alignment:
| Q |
11 |
cacagacccaaaatgcaattacagttttgaaaacaaacatacatatacattcccaa |
66 |
Q |
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| T |
39731942 |
cacagacccaaaatgcaattacagttttgaaaacaaacatacatatacattcccaa |
39731887 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 39731783 - 39731727
Alignment:
| Q |
188 |
gctaatgaaacctgataatggctagcctatatcagtgtgtcaacaaaagttgcttccttaat |
249 |
Q |
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| T |
39731783 |
gctaatgaaacctgataatggcta-----tatcagtgtgtcaacaaaagttgcttccttaat |
39731727 |
T |
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