View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9619_low_18 (Length: 289)
Name: NF9619_low_18
Description: NF9619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9619_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 26470456 - 26470197
Alignment:
| Q |
1 |
aggtggagtgagttgtgtaaccaatccaattattattttgaagttaagtagtcttatcaacacctaacagaacattttaatttaattaatatatttccct |
100 |
Q |
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| T |
26470456 |
aggtggagtgagttgtgtaaccaatccaattattattttgaagttaagtagtcttatcaacacctaacagaacattttaatttaattaatatatttccct |
26470357 |
T |
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| Q |
101 |
tctacctctccactctccaaaataataataat-----------tttttagttctaaattataagtcgtttttatcatcacacaaattaagaaatctaatt |
189 |
Q |
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| T |
26470356 |
tctccctctccactctccaaaataataataataataataataattttttattctaacttataagtcgtttttatcatcacacaaattaagaaatctaatt |
26470257 |
T |
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| Q |
190 |
ttgtataagaatgagaaactatgaatcattttacaaatgtatccattattaatggtattc |
249 |
Q |
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| T |
26470256 |
ttgtataggaatgagaaactatgaatcattttacaaatttatccattattaatggtattc |
26470197 |
T |
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