View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9619_low_3 (Length: 467)
Name: NF9619_low_3
Description: NF9619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9619_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 26 - 454
Target Start/End: Complemental strand, 32310044 - 32309616
Alignment:
| Q |
26 |
gttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcccaccaccc |
125 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310044 |
gttatcgtcaggccttggaatttgatcagttgcctcgtggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcccaccaccc |
32309945 |
T |
|
| Q |
126 |
tgcgatggccatgtccataaataaatcataggtgcataaataaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttat |
225 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32309944 |
tgcaatggccatgtccataaataaatcataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttat |
32309845 |
T |
|
| Q |
226 |
aggtgttaggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctcct |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32309844 |
aggtgttaggaacaaaccaaaagaacggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctcct |
32309745 |
T |
|
| Q |
326 |
taatcatgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaacagcaagga |
425 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
32309744 |
taatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccatttctatcaccattgtcttccaatagcaagga |
32309645 |
T |
|
| Q |
426 |
agcatcacagccctgatttcgcaacacca |
454 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |
|
|
| T |
32309644 |
agcatcacatccctgatttcgtaacacca |
32309616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 32305919 - 32305483
Alignment:
| Q |
18 |
cgcgtaatgttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32305919 |
cgcgtaatgttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactagatagaaaggcc |
32305820 |
T |
|
| Q |
118 |
caccaccctgcgatggccatgtccataaataaatcataggtgcataaataaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttat |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32305819 |
caccaccctgcgatgaccatgtccataaataaatcataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttat |
32305720 |
T |
|
| Q |
218 |
aaacttataggtgttaggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
32305719 |
aaacttataggtgttaggaacaaaccaaaagaacggaatctcttgtgacaagagcaagtatgtcagtacaagacacaacgccgggacatgcttgatccac |
32305620 |
T |
|
| Q |
318 |
ctcctccttaatcatgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaac |
417 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
32305619 |
ctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccatagtcttccaat |
32305520 |
T |
|
| Q |
418 |
agcaaggaagcatcacagccctgatttcgcaacacca |
454 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
32305519 |
agcaaggaagcatcacatccctgatttggcaacacca |
32305483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 166 - 454
Target Start/End: Original strand, 32564930 - 32565218
Alignment:
| Q |
166 |
taaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaacggaatctcttgcag |
265 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |
|
|
| T |
32564930 |
taaagtgaaaatgcatcagaattaagagcattcaacagaagatatatgttataaacttataggtgcgaggaacataccaaaagaacggaatctcttgcgg |
32565029 |
T |
|
| Q |
266 |
cgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcatgtcaactttatcaaaacttttcaacatttgatt |
365 |
Q |
| |
|
| ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||| ||||||| |
|
|
| T |
32565030 |
caagagcaagtatgtcagcacacgacacaatgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatt |
32565129 |
T |
|
| Q |
366 |
tggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaacagcaaggaagcatcacagccctgatttcgcaacacca |
454 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
32565130 |
tggaatagcctgcttctcataggaaccgtttctatcaccattgtcttccaatagcaaggaagcatcacaaccctgatttagaaacacca |
32565218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 32787228 - 32787451
Alignment:
| Q |
22 |
taatgttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcccacc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32787228 |
taatgttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaatggcccacc |
32787327 |
T |
|
| Q |
122 |
accctgcgatggccatgtccataaataaatcataggtgcataaataaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaac |
221 |
Q |
| |
|
| ||||||||||||||||| || ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32787328 |
agcctgcgatggccatgtcaattaataaatcatacgttcataaataaagtgaaaatgcatcagaattaagagctttcaacagaagatatatgttataaac |
32787427 |
T |
|
| Q |
222 |
ttataggtgttaggaacaaaccaa |
245 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32787428 |
ttataggtgttaggaacaaaccaa |
32787451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 32814440 - 32814610
Alignment:
| Q |
22 |
taatgttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcccacc |
121 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32814440 |
taatgctatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcccacc |
32814539 |
T |
|
| Q |
122 |
accctgcgatggccatgtccataaataaatcataggtgcataaataaagtgaaaatgcataagaattaaga |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
32814540 |
accctgcgatggccatgtccataaataaatcataggtgcataaataaagtgaaaatgcatcataattaaga |
32814610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 232 - 454
Target Start/End: Original strand, 32814619 - 32814841
Alignment:
| Q |
232 |
taggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatca |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
32814619 |
taggaacaaaccaaaagaacggaatctcttacggcaagagcaagtatgtcagcacaagaaacaacgccgggacatgcttgctccacctcttccttgatca |
32814718 |
T |
|
| Q |
332 |
tgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaacagcaaggaagcatc |
431 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
32814719 |
agtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccattgtcttccaatagcaaggaagcatc |
32814818 |
T |
|
| Q |
432 |
acagccctgatttcgcaacacca |
454 |
Q |
| |
|
||| ||||||||||| ||||||| |
|
|
| T |
32814819 |
acatccctgatttcgtaacacca |
32814841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 229 - 454
Target Start/End: Complemental strand, 28221052 - 28220827
Alignment:
| Q |
229 |
tgttaggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaa |
328 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28221052 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaa |
28220953 |
T |
|
| Q |
329 |
tcatgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaacagcaaggaagc |
428 |
Q |
| |
|
||| ||||||||| ||| || |||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28220952 |
tcaagtcaactttgtcattacctttcaatgtttgatttggaatagcttgcttctcataggaactgtttctatcaccattgtcctccaacaacaaggaagc |
28220853 |
T |
|
| Q |
429 |
atcacagccctgatttcgcaacacca |
454 |
Q |
| |
|
|||||| |||||||| ||||||||| |
|
|
| T |
28220852 |
atcacaaccctgattcagcaacacca |
28220827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 28221481 - 28221333
Alignment:
| Q |
18 |
cgcgtaatgttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcc |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28221481 |
cgcgtgatgttatcgtcaggccttggaatttgatcagatgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggac |
28221382 |
T |
|
| Q |
118 |
caccaccctgcgatggccatgtccataaataaatcataggtgcataaat |
166 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
28221381 |
caccaccctgccatggccatgtccataaataaatcataagtgcaaaaat |
28221333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 28214803 - 28214953
Alignment:
| Q |
18 |
cgcgtaatgttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcc |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28214803 |
cgcgtgatgttatcgtcaggccttggaatttgatcagctgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggtc |
28214902 |
T |
|
| Q |
118 |
caccaccctgcgatggccatgtccataaataaatcataggtgcataaataa |
168 |
Q |
| |
|
| ||||||||| ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
28214903 |
ccccaccctgccatggccatgtcgataaataaatcataggtgcaaaaataa |
28214953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 229 - 401
Target Start/End: Original strand, 28215204 - 28215376
Alignment:
| Q |
229 |
tgttaggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaa |
328 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28215204 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttccacctcctccttaa |
28215303 |
T |
|
| Q |
329 |
tcatgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatc |
401 |
Q |
| |
|
||| ||||||||| ||||||| ||| || ||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
28215304 |
tcaagtcaactttgtcaaaaccttttaatgtttgatttggaatagcctgcttctcataggaaatgtttctatc |
28215376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 32564776 - 32564879
Alignment:
| Q |
26 |
gttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcccaccaccc |
125 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564776 |
gttatcgtcaggccttggaatttgatcagttgcctcgtggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcccaccaccc |
32564875 |
T |
|
| Q |
126 |
tgcg |
129 |
Q |
| |
|
|||| |
|
|
| T |
32564876 |
tgcg |
32564879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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