View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9619_low_6 (Length: 414)
Name: NF9619_low_6
Description: NF9619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9619_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 86 - 408
Target Start/End: Original strand, 45583826 - 45584148
Alignment:
| Q |
86 |
cacaacaatgtattgataatgatagattcctctctcaaacagacaaatgggaatttatcactcaaattattatcttactttcatgcatctctctatctct |
185 |
Q |
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| T |
45583826 |
cacaacaatgtattgataatgatagattcctctctcaaacagacaaatgggaatttatcactcaaattattatcttactttcatgcatctctctatctct |
45583925 |
T |
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| Q |
186 |
gaaaacacatttattaaaactgcatcatatcatgtttcagaatggctgataccttacaatcgttgatggtgatagtatatattcattcaatatagactta |
285 |
Q |
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| T |
45583926 |
gaaaacacatttattaaaactgcatcatatcatgtttcagaatggctgataccttacaatcgttgatggtgatagtatatattcattcaatatagactta |
45584025 |
T |
|
| Q |
286 |
ttcactaccactcagtcgacagtgtcgttgatgttgatacgacacggtttcagttgaatgataaaagaaactaaatatgaaaccaaaaatcttgtttctt |
385 |
Q |
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| T |
45584026 |
ttcactaccactcagtcgacagtgtcgttgatgttgatacgacacggtttcagttgaatgataaaagaaactaaatatgaaaccaaaaatcttgtttctt |
45584125 |
T |
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| Q |
386 |
ttttcctttgcaacatttaaagc |
408 |
Q |
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| T |
45584126 |
ttttcctttgcaacatttaaagc |
45584148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 45583745 - 45583788
Alignment:
| Q |
13 |
attattctatatgtgcaacttcccttcatctgcacacacatgaa |
56 |
Q |
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| T |
45583745 |
attattctatatgtgcaacttcccttcatctgcacacacatgaa |
45583788 |
T |
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