View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_high_1 (Length: 490)
Name: NF9620_high_1
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 11624692 - 11624891
Alignment:
| Q |
1 |
gtggcgataatgtgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacac |
100 |
Q |
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| T |
11624692 |
gtggcgataatgcgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttccacctgcagtccaatatctttgacac |
11624791 |
T |
|
| Q |
101 |
gccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacaggagtaatttgtctg |
200 |
Q |
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| T |
11624792 |
gccttgcagaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacaggagtaatttgtctg |
11624891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 273 - 471
Target Start/End: Original strand, 11624964 - 11625156
Alignment:
| Q |
273 |
aagtttcttcatctatggaaggtgtttttgggttctgaataccctccggtaatgttgctgctgaattgttgttgttcttgatctctgcggcatccggtgg |
372 |
Q |
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| T |
11624964 |
aagtttcttcatctatggaaggtgtttttgggtt------accctccggtaatgttgctgctgaattgttgttgttcttgatctctgctgcatctggtgg |
11625057 |
T |
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| Q |
373 |
aggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgacacaagttttcattaaaggttaacgatgaacatgagaca |
471 |
Q |
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| T |
11625058 |
aggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgacacaagttttcattaaaggttaacgatgaacatgagaca |
11625156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 31771910 - 31771803
Alignment:
| Q |
56 |
ggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaact |
155 |
Q |
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| T |
31771910 |
ggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaacaaaatt |
31771811 |
T |
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| Q |
156 |
ttgtgtcc |
163 |
Q |
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| T |
31771810 |
tggtgtcc |
31771803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 2823737 - 2823621
Alignment:
| Q |
47 |
gcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagt |
146 |
Q |
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| T |
2823737 |
gcacctaccggtacgtttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacattgtaattattatagt |
2823638 |
T |
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| Q |
147 |
aacagaactttgtgtcc |
163 |
Q |
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| T |
2823637 |
agcagaacttcgtgtcc |
2823621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 18193495 - 18193381
Alignment:
| Q |
69 |
tggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgct |
168 |
Q |
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||||||| || |||||||||||||| ||||| ||||| || | || ||||| ||| |||||||||||||||||||||| || |||||||| |||| |
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| T |
18193495 |
tggttcctccggcagtccaatatctctgacagtttttgcagaagtgtcggggctggttggcgttgtaattattgtagtaacaaaattttgtgtctacgct |
18193396 |
T |
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| Q |
169 |
gttgcagcgtggaca |
183 |
Q |
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||||| | |||||| |
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| T |
18193395 |
tttgcatcttggaca |
18193381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 18188204 - 18188160
Alignment:
| Q |
119 |
ggctgattgacgttgtaattattgtagtaacagaactttgtgtcc |
163 |
Q |
| |
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||||| ||| |||||||||||||||||||||| || ||||||||| |
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| T |
18188204 |
ggctggttggcgttgtaattattgtagtaacaaaattttgtgtcc |
18188160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 3775700 - 3775596
Alignment:
| Q |
59 |
acatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttg |
158 |
Q |
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||||||||||||| ||| || |||||||| ||||| || || ||||||||||| ||| || || || || ||||| ||||||||||| ||||| || | |
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| T |
3775700 |
acatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaatttgg |
3775601 |
T |
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| Q |
159 |
tgtcc |
163 |
Q |
| |
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||||| |
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| T |
3775600 |
tgtcc |
3775596 |
T |
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