View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9620_high_13 (Length: 269)

Name: NF9620_high_13
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9620_high_13
NF9620_high_13
[»] chr3 (5 HSPs)
chr3 (155-259)||(48866904-48867012)
chr3 (15-77)||(48866651-48866713)
chr3 (15-78)||(48866605-48866668)
chr3 (19-72)||(23560773-23560825)
chr3 (34-66)||(12061078-12061110)
[»] chr7 (3 HSPs)
chr7 (15-77)||(33458705-33458766)
chr7 (15-66)||(21709971-21710021)
chr7 (15-66)||(26025530-26025580)
[»] chr6 (4 HSPs)
chr6 (155-242)||(20756893-20756985)
chr6 (19-66)||(14326570-14326616)
chr6 (19-66)||(14419580-14419626)
chr6 (15-66)||(21283351-21283401)
[»] chr1 (4 HSPs)
chr1 (15-77)||(2972135-2972196)
chr1 (19-77)||(40812240-40812297)
chr1 (15-66)||(16962803-16962853)
chr1 (15-66)||(51598601-51598651)
[»] chr8 (3 HSPs)
chr8 (19-77)||(13366145-13366202)
chr8 (15-66)||(39567681-39567731)
chr8 (19-66)||(8096197-8096243)
[»] chr4 (4 HSPs)
chr4 (15-77)||(40145393-40145454)
chr4 (15-66)||(756867-756917)
chr4 (15-66)||(702285-702335)
chr4 (15-66)||(770584-770634)
[»] scaffold0122 (1 HSPs)
scaffold0122 (19-66)||(16873-16919)
[»] scaffold0031 (1 HSPs)
scaffold0031 (15-66)||(123802-123852)
[»] chr2 (1 HSPs)
chr2 (19-64)||(14510169-14510213)


Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 48866904 - 48867012
Alignment:
Q  155 tggtgaagatgcaagcaattaattggtggaccaggtgggaagtg----atctatttttcattgtttttgtttatttatttaattaacttacatctgggtg 250  Q
    |||||||||| ||||||||||||||||||| || ||||||||||    || || ||||||||||||||||| |||||||||||||||||||| |||||||    
T  48866904 tggtgaagatacaagcaattaattggtggatcatgtgggaagtgttgaatttaattttcattgtttttgttcatttatttaattaacttacacctgggtg 48867003  T
Q  251 atgtccatc 259  Q
    ||| |||||    
T  48867004 atggccatc 48867012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 48866651 - 48866713
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaatttcaatttaaa 77  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48866651 tcaaatttcaatctaaaacccatttttggatctaatctaaacccttccaaatttcaatttaaa 48866713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 48866605 - 48866668
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaatttcaatttaaaa 78  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  48866605 tcaaatttcaatctaaaacccatttttggatctaatctaaatcctttcaaatttcaatctaaaa 48866668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 23560825 - 23560773
Alignment:
Q  19 attccaatctaaaacccatttttggatctaatctaaacccttccaaatttcaat 72  Q
    ||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||    
T  23560825 attccaatctaaa-cccatttttggatctaatctaaacactttcaaattccaat 23560773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 12061078 - 12061110
Alignment:
Q  34 ccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||||||||| |||||||||    
T  12061078 ccatttttggatctaatctaaactcttccaaat 12061110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 33458705 - 33458766
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaatttcaatttaaa 77  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||    
T  33458705 tcaaattccaatctaaa-cccatttttggatctaatctaaactcttccaaattccaatttaaa 33458766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 21709971 - 21710021
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  21709971 tcaaattccaatctaaa-cccatttttggatctaatctaaattcttccaaat 21710021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 26025580 - 26025530
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  26025580 tcaaattccaatctaaa-cccatttttggatctaatctaaattcttccaaat 26025530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 20756893 - 20756985
Alignment:
Q  155 tggtgaagatgcaagcaattaattggtggaccaggtgggaagt----gatctatttttcattgtttttgttt-atttatttaattaacttaca 242  Q
    ||||||||||||||||||||||||||||||||  |||| ||||     ||||| |||||||||||||| ||| ||||||||||||||||||||    
T  20756893 tggtgaagatgcaagcaattaattggtggacctcgtggaaagtcttgaatctaattttcattgtttttttttcatttatttaattaacttaca 20756985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 14326570 - 14326616
Alignment:
Q  19 attccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  14326570 attccaatctaaa-cccatttttggatctaatctaaacacttccaaat 14326616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 14419580 - 14419626
Alignment:
Q  19 attccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  14419580 attccaatctaaa-cccatttttggatctaatctaaacacttccaaat 14419626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 21283351 - 21283401
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||| |||| ||||||||||||||||||  |||||||||    
T  21283351 tcaaattccaatctaaa-cccaattttggatctaatctaaattcttccaaat 21283401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 2972135 - 2972196
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaatttcaatttaaa 77  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||    
T  2972135 tcaaagtccaatctaaa-cccatttttggatctaatctaaacccttccaaattccaatataaa 2972196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 40812297 - 40812240
Alignment:
Q  19 attccaatctaaaacccatttttggatctaatctaaacccttccaaatttcaatttaaa 77  Q
    ||||||||||||| || |||||||||||||||||||| ||||||||||  |||||||||    
T  40812297 attccaatctaaa-cctatttttggatctaatctaaatccttccaaatcccaatttaaa 40812240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 16962803 - 16962853
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||| ||||||||| |||||||||||||||||||||||  |||||||||    
T  16962803 tcaaatttcaatctaaa-cccatttttggatctaatctaaattcttccaaat 16962853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 51598651 - 51598601
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||| || ||||||||||||||||||||  |||||||||    
T  51598651 tcaaattccaatctaaatcc-atttttggatctaatctaaattcttccaaat 51598601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 13366145 - 13366202
Alignment:
Q  19 attccaatctaaaacccatttttggatctaatctaaacccttccaaatttcaatttaaa 77  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||    
T  13366145 attccaatctaaa-ctcatttttggatctaatctaaacccttccaaattccaatctaaa 13366202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 39567731 - 39567681
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  39567731 tcaaattccaatctaaa-cccatttttggatctaatctaaattcttccaaat 39567681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 8096243 - 8096197
Alignment:
Q  19 attccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||| || ||||||||||||||||||||| |||||||||    
T  8096243 attccaatctaaatcc-atttttggatctaatctaaactcttccaaat 8096197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 40145454 - 40145393
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaatttcaatttaaa 77  Q
    |||||||||||||| |||||||||| |||||||||| ||||| |||||||||| |||||||||    
T  40145454 tcaaattccaatct-aaacccatttatggatctaatttaaactcttccaaattccaatttaaa 40145393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 756867 - 756917
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  756867 tcaaattccaatctaaa-cccatttttggatctaatctaaattcttccaaat 756917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 702335 - 702285
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||| | |||||||||||||||||||||  |||||||||    
T  702335 tcaaattccaatctaaa-ctcatttttggatctaatctaaattcttccaaat 702285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 770634 - 770584
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||| | |||||||||||||||||||||  |||||||||    
T  770634 tcaaattccaatctaaa-ctcatttttggatctaatctaaattcttccaaat 770584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 16919 - 16873
Alignment:
Q  19 attccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||    
T  16919 attccaatctaaa-ctcatttttggatgtaatctaaacccttccaaat 16873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 123802 - 123852
Alignment:
Q  15 tcaaattccaatctaaaacccatttttggatctaatctaaacccttccaaat 66  Q
    ||||||||||||||||| |||||||||| ||||||||||||  |||||||||    
T  123802 tcaaattccaatctaaa-cccatttttgaatctaatctaaattcttccaaat 123852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 14510213 - 14510169
Alignment:
Q  19 attccaatctaaaacccatttttggatctaatctaaacccttccaa 64  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||||    
T  14510213 attccaatctaaa-ctcatttttggatctaatctaaatccttccaa 14510169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University