View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_high_18 (Length: 234)
Name: NF9620_high_18
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_high_18 |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 10419840 - 10420001
Alignment:
| Q |
71 |
aacttcactataacatcttttgtgagcattccatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatcactagacactccttaatcn |
170 |
Q |
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| T |
10419840 |
aacttcactataacatcttttgtgagcactcgatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatcactagacactccttaat-- |
10419937 |
T |
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| Q |
171 |
nnnnnnnnccatcattagtgtctgatctttaggaaatggcataagcaaatgtgaatccactatc |
234 |
Q |
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| T |
10419938 |
gtttttttccgtcattagtgtctgatctttaggaaatggcataagcaaatgtgaatccactatc |
10420001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 10414936 - 10415052
Alignment:
| Q |
53 |
ttctgcttaatttcaagcaacttcactataacatcttttgtgagcattccatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatca |
152 |
Q |
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| T |
10414936 |
ttctgttttatttcaaggaacttatctataacatcttttatcaacattcgatgagaaggaacttcttcagaacatgcaactccgattgcaccaaacatca |
10415035 |
T |
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| Q |
153 |
ctagacactccttaatc |
169 |
Q |
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| T |
10415036 |
ccaaacacttcttaatc |
10415052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 35367811 - 35367616
Alignment:
| Q |
22 |
tcaaggtggtagtagtgcttagcagagcaacttctgcttaatttcaagcaacttcactataacatcttttgtgagcattccatgagtagcgaattcttcg |
121 |
Q |
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| T |
35367811 |
tcaaggtagtagtagtacctagcagagcaacttctgcttaatttccagcaacttcactgtaacattttttatcaacattcgatgagtagggaattcttcg |
35367712 |
T |
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| Q |
122 |
gaacatgcaactcctatttcagcaaacatcactagacactccttaatcnnnnnnnnnccatcattagtgtctgatctttaggaaatggcataagcaaatg |
221 |
Q |
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| T |
35367711 |
gaacatgcaactcctattttagcaaacatcactagacact-----------------ccatcattagtgtctgatctttaagaaatggcataagcaaatg |
35367629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 35755777 - 35755662
Alignment:
| Q |
50 |
aacttctgcttaatttcaagcaacttcactataacatcttttgtgagcattccatgagtagcgaattcttcggaacatgcaactcctatttcagcaaaca |
149 |
Q |
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|||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||| |
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| T |
35755777 |
aacttctgtttaatttcaagcaacttaattataacatcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaaca |
35755678 |
T |
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| Q |
150 |
tcactagacactcctt |
165 |
Q |
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|||||||||||||||| |
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| T |
35755677 |
tcactagacactcctt |
35755662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 35377384 - 35377272
Alignment:
| Q |
53 |
ttctgcttaatttcaagcaacttcactataacatcttttgtgagcattccatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatca |
152 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||| |||||| | ||||||||||| |
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| T |
35377384 |
ttctgtttaatttcaagcaacttcactataatatcttttgtgagcattctctgagtagggaattcttcagaacatgcaattcctatattagcaaacatca |
35377285 |
T |
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| Q |
153 |
ctagacactcctt |
165 |
Q |
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| T |
35377284 |
ctagacactcctt |
35377272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 35426337 - 35426231
Alignment:
| Q |
59 |
ttaatttcaagcaacttcactataacatcttttgtgagcattccatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatcactagac |
158 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||||| |||||||||||||| || |
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| T |
35426337 |
ttaatttcaagcaacttaactataacatcttttgtgagcattctctgagtaggaaattcttcagaacatgcaattcctattttagcaaacatcactaaac |
35426238 |
T |
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| Q |
159 |
actcctt |
165 |
Q |
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||||||| |
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| T |
35426237 |
actcctt |
35426231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 35386926 - 35386843
Alignment:
| Q |
70 |
caacttcactataacatcttttgtgagcattccatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatcac |
153 |
Q |
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| T |
35386926 |
caacttaactataacatcttttatcaacattcgatgagtagtgacctctttagaacatgcgactccaattgcagcaaacatcac |
35386843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 35411594 - 35411489
Alignment:
| Q |
48 |
gcaacttctgcttaatttcaagcaacttcactataacatcttttgtgagcattccatgagtagcgaattcttcggaacatgcaactcctatttcagcaaa |
147 |
Q |
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| T |
35411594 |
gcaacttcttttttatttcaagcaacttaacgataacatcttttatcaacattcgatgagcaggaaactcgtcagagcatgcaactccgattctagcaaa |
35411495 |
T |
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| Q |
148 |
catcac |
153 |
Q |
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|||||| |
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| T |
35411494 |
catcac |
35411489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 15294601 - 15294549
Alignment:
| Q |
113 |
aattcttcggaacatgcaactcctatttcagcaaacatcactagacactcctt |
165 |
Q |
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| T |
15294601 |
aattcatcagaacatgcaactcctattttagcaaacatcactagacattcctt |
15294549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 15474970 - 15474918
Alignment:
| Q |
113 |
aattcttcggaacatgcaactcctatttcagcaaacatcactagacactcctt |
165 |
Q |
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| T |
15474970 |
aattcatcagaacatgcaactcctattttagcaaacatcactagacattcctt |
15474918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 29622507 - 29622590
Alignment:
| Q |
70 |
caacttcactataacatcttttgtgagcattccatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatcac |
153 |
Q |
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| T |
29622507 |
caacttaactataacatcttttattagcattcgatgagcaggaaactcttgagaacatgcaactccaattctagcaaacatcac |
29622590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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