View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_high_19 (Length: 223)
Name: NF9620_high_19
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 52725918 - 52726105
Alignment:
| Q |
20 |
attcatgcacctgattaagtaaatgtcgttaaacatgtgcaatgatgagaaattagagatattgattgaatccaaccgaaatgatgatgatgataccctt |
119 |
Q |
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| T |
52725918 |
attcatgcacctgattaagtaaatgtcgttaaacatgtgcaatgatgagaaattagagatattgattgaatccaaccgaaatgatgatgatgataccctt |
52726017 |
T |
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| Q |
120 |
taagagtgacaatcaaaatcttcatgcttggcccgccttgaaacaacttaaagtttcacgtcttagaaattatatgtgtgggtctctg |
207 |
Q |
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| T |
52726018 |
tgagagtgacaatcaaaatcttcatgcttggcccgccttgaaacaacttaaagtttcacgtcttagaaatcatatgtgtgggtctctg |
52726105 |
T |
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