View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_high_2 (Length: 489)
Name: NF9620_high_2
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 44575590 - 44575136
Alignment:
| Q |
19 |
aggaatctgttgtttcattgtaatggatcagcagagcacatttggtgtgcttcaagttatacaaactgataggtctattggatctcacttcaaggttcca |
118 |
Q |
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| T |
44575590 |
aggaatttgttgtttcattgtaatggatcagcagagcacatttggtgtgcttcaagttatacagactgataggtctattggatctcacttcaaggttcca |
44575491 |
T |
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| Q |
119 |
ccaggatggatgaacttgatatcaatgacatcactttcattttggatatgcatttatgagtgtatctaccttcctataatgaggataatcaataaa-ggg |
217 |
Q |
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| T |
44575490 |
ccaggatggatgaacttgatatcaatgacatcactttcattttggatatgcatttatgagtgtatctaccttcctataatgaggataatcaataaaaggg |
44575391 |
T |
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| Q |
218 |
ctacaagaagaatgagcatgggatgcagaatcagaattgggatattattatctatcctatgcatgttggtagctgcagttattgagaaaaagcgtcgtga |
317 |
Q |
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| T |
44575390 |
ctacaagaagaatgagcatgggatgcagaatcagaattgggatattattatctatcctatgcatgttggtagctgcagttgttgagaaaaagcgtcgtga |
44575291 |
T |
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| Q |
318 |
ctcggctttgaaacacaattcgtttatttcgcctgtgagctttggtttgctcttgccgcagtttgcgctgtccggtttaaatgaagcctttgctgctgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575290 |
ctcggctttgaaacacaattcgtttatttcgcctgtgagctttggtttgctcttgccgcagtttgcgctgtccggtttaaatgaagcctttgctgctgtt |
44575191 |
T |
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| Q |
418 |
gctataatggaattctttacccttcaagtgccggagtctatgaggactgtttctg |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575190 |
gctataatggaattctttacccttcaagtgccggagtctatgaggactgtttctg |
44575136 |
T |
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