View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_high_8 (Length: 358)
Name: NF9620_high_8
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 64 - 348
Target Start/End: Original strand, 5718201 - 5718487
Alignment:
| Q |
64 |
tgaaattatgtaacatnnnnnnngaagcatccgcgtaattatttcgtggaggtaaatat--gataattacaaagaatatgtaatcattacatatcttaac |
161 |
Q |
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| T |
5718201 |
tgaaattatgtaacataaaaatagaagcatacgcgtaattatttcgtggaggtaaatatatgataattacaaagaatatgtaatcattacatatcttaac |
5718300 |
T |
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| Q |
162 |
taaaatacacacaccatttgaacctggtctgaattcaatagttaattagaccccaaatagataacgtgtcaattgttataatatcatattcacgcataat |
261 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5718301 |
taaaatacacacgccatttgaacctggtctgaattcaatagttaattagaccccaaatagataacgtgtcaattgtcataatatcatattcacgcataat |
5718400 |
T |
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| Q |
262 |
gtggaggagaataatgattagatttggataactacaaactgaaaaatggtaagaagaaagaatggaaaatgcagaaacacgaaactc |
348 |
Q |
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| T |
5718401 |
gtggaggagaataatgattagatttggataactacaaactgaaaaatggtaagaagaaagaatggaaaatgcagaaacacgaaactc |
5718487 |
T |
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