View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_1 (Length: 542)
Name: NF9620_low_1
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 41174402 - 41173877
Alignment:
| Q |
1 |
agttcaagaggcgctagaccgcgcttcaacgggaaaaacaaccataattgttgcacataggctatcaaccatcaggaatgccaatgtgattgctgtgatt |
100 |
Q |
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| T |
41174402 |
agttcaagaggcgctagaccgcgcttcaacgggaaaaacaaccataattgttgcacataggctatcaactatcaggaatgccaatgtgattgctgtgatt |
41174303 |
T |
|
| Q |
101 |
gatgatggtaaagtagctgagcaaggttcacattcacagttgatgaaaaatcatcaggatgggatatatgcgcgcatgattcaattacaaaggtttacac |
200 |
Q |
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| T |
41174302 |
gatgatggtaaagtagctgagcaaggttcacattcacagttgatgaaaaatcatcaggatgggatatatgcgcgcatgattcaattacaaaggtttacac |
41174203 |
T |
|
| Q |
201 |
acaacgaggtaattggtatggcatctggttcaagttcttcaacataaccaagagacgaagaaaaatctaatgaaaataccagctacaggaatatatgcca |
300 |
Q |
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| T |
41174202 |
acaacgaagtaattggtatggcatctggttcaagttcttcaacataaccaagagacgaagaaaaatctaatgaaaataccagctacaggaatatatgcca |
41174103 |
T |
|
| Q |
301 |
tatatatacacatttataactattggcattttttgtcttgaaaatagtatagagtttgtgtattagtcctactctttcttttcatgtcctattaaagaat |
400 |
Q |
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| T |
41174102 |
tatatatacacatttataactattggcattttttgtcttgaaaatagtatagagtttgtgtattagtcctactctttcttttcatgtcctattaaagaat |
41174003 |
T |
|
| Q |
401 |
gtatgtatgtatgttcttgtctttgtgaatgttactaagaaaattaatgacaaatgaattgatgctcatccttattaatttattgaagggttcttctttt |
500 |
Q |
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| T |
41174002 |
gtatgtatgtatgttcttgtctttgtgaatgttactaagaaaattaatgacaaatgaattgatgctcatccttattaatttattgaagggttcttctttt |
41173903 |
T |
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| Q |
501 |
ttgcattttattagtcacgaactttg |
526 |
Q |
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| T |
41173902 |
ttgcattttattagtcacgaactttg |
41173877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 27813431 - 27813584
Alignment:
| Q |
30 |
cgggaaaaacaaccataattgttgcacataggctatcaaccatcaggaatgccaatgtgattgctgtgattgatgatggtaaagtagctgagcaaggttc |
129 |
Q |
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||||||||||||| || ||||||||||| ||||||||||| || |||||||||||| | ||||| |||||||||||||| | ||| | || ||||| || |
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| T |
27813431 |
cgggaaaaacaactatcattgttgcacacaggctatcaactataaggaatgccaatctcattgcagtgattgatgatgggacagttgaagaacaaggctc |
27813530 |
T |
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| Q |
130 |
acattcacagttgatgaaaaatcatcaggatgggatatatgcgcgcatgattca |
183 |
Q |
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| T |
27813531 |
acattcacatttgttgaaaaatcacccggatgggatctatgcacgcatgattca |
27813584 |
T |
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Back To:
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