View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9620_low_12 (Length: 451)

Name: NF9620_low_12
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9620_low_12
NF9620_low_12
[»] chr8 (13 HSPs)
chr8 (1-436)||(2055815-2056250)
chr8 (4-436)||(2051958-2052376)
chr8 (283-436)||(2059019-2059169)
chr8 (219-412)||(10769496-10769686)
chr8 (261-412)||(2034767-2034915)
chr8 (261-412)||(2038845-2038993)
chr8 (238-412)||(1948013-1948184)
chr8 (258-412)||(2029849-2030000)
chr8 (236-412)||(2048088-2048261)
chr8 (87-144)||(2035045-2035102)
chr8 (87-135)||(2048356-2048404)
chr8 (91-135)||(2059355-2059399)
chr8 (87-145)||(2039142-2039200)
[»] chr4 (1 HSPs)
chr4 (247-411)||(48904799-48904963)
[»] chr2 (4 HSPs)
chr2 (318-405)||(28699396-28699483)
chr2 (315-377)||(28782846-28782908)
chr2 (317-405)||(28734895-28734983)
chr2 (315-405)||(28742026-28742116)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 2056250 - 2055815
Alignment:
Q  1 tactttacttacctctcaactgaactctgaattactatggaacctttctctcgaaactggagggttatgataaataaaacatcttgttcaataagtgaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  2056250 tactttacttacctctcaactgaactctgaattactatggaacctttctctccaaactggagggttatgataaataaaacattttgttcaataagtgaat 2056151  T
Q  101 gtttatacattgtaattcatccattggatgaaataaaaaccacatcatgtttatgagttcatatcacaaattcacaatcaagtggaattgatgaaaccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2056150 gtttatacattgtaattcatccattggatgaaataaaaaccacatcatgtttatgagttcatatcacaaattcacaatcaagtggaattgatgaaaccaa 2056051  T
Q  201 ctcacaaagatctgacaattatttatacgagctaatgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2056050 ctcacaaagatctgacaattatttatacgagctaatgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctact 2055951  T
Q  301 ccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccataga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2055950 ccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataacagttccttcattggtccataga 2055851  T
Q  401 gctttgaggatgctttaagtcccgttgagaaaaagc 436  Q
    ||||||||||||||||||||||||| ||||||||||    
T  2055850 gctttgaggatgctttaagtcccgtcgagaaaaagc 2055815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 436
Target Start/End: Complemental strand, 2052376 - 2051958
Alignment:
Q  4 tttacttacctctcaactgaactctgaattacta-tggaacctttctctcgaaactggagggttatgataaataaaacatct-tgttcaataagtgaatg 101  Q
    |||||||||||  |||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  2052376 tttacttaccttccaaccgaactctgaattattaatggaacctttctctcgaaactggagggttatgataaataaaatatctgtgttcaataagtgaatg 2052277  T
Q  102 tttatacattgtaattcatccattggatgaa--ataaaaaccacatcatgtttatgagttcatatcacaaattcacaatcaagtggaattgatgaaacca 199  Q
    ||||||| |||||||||||| |||| |||||  | ||||| |||||||| |||||||||||||||||||| | || |             ||||| ||||    
T  2052276 tttataccttgtaattcatctattgcatgaagaaaaaaaaacacatcatatttatgagttcatatcacaattacaaa-------------gatgatacca 2052190  T
Q  200 actcacaaagatctgacaattatttatacgagctaatgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctac 299  Q
    ||||||||||||||| |||||||||||  |||||||| |||||||| |||||||||| ||||||||| |||||||||  ||| ||||||||||||||||     
T  2052189 actcacaaagatctgtcaattatttat--gagctaatattttttctgccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctag 2052092  T
Q  300 tccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatag 399  Q
    |||||||||||||||||||   ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||  ||||||||||| |||||||||    
T  2052091 tccttttgctcgaaagtag---gctacataatcagcaacagaagtttctctgtatttgggaggattgtcttctgatagcagttccttcataggtccatag 2051995  T
Q  400 agctttgaggatgctttaagtcccgttgagaaaaagc 436  Q
    |||||||| |||||||||||| | || ||||||||||    
T  2051994 agctttgaagatgctttaagtgctgtggagaaaaagc 2051958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 283 - 436
Target Start/End: Complemental strand, 2059169 - 2059019
Alignment:
Q  283 gcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagtt 382  Q
    |||||||||||||||| || ||||||||||||| ||   ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  2059169 gcagaagtaccatctagtctttttgctcgaaagcag---gctacataatcagcaacagaagtttctctgtatttgggaggattgtcttctgataatagtt 2059073  T
Q  383 ccttcattggtccatagagctttgaggatgctttaagtcccgttgagaaaaagc 436  Q
    ||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||    
T  2059072 ccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagc 2059019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 219 - 412
Target Start/End: Complemental strand, 10769686 - 10769496
Alignment:
Q  219 ttatttatacgagctaatgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtag 318  Q
    |||||| || |||||||| |||||||| |||||||||| ||||||||| |||||||||  ||| |||||||||||||||| ||||||||||  ||   |     
T  10769686 ttatttgtatgagctaatattttttcttccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttcaa---aa 10769590  T
Q  319 taggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatg 412  Q
    ||||||||||| |||||||| |  |||||| ||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  10769589 taggctacatagtcagcaactgaggtttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatg 10769496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 261 - 412
Target Start/End: Complemental strand, 2034915 - 2034767
Alignment:
Q  261 tcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttagga 360  Q
    |||||| |||||||||  ||| |||||||||||||||| |||||||  |  ||||||    ||||||||||||| ||| || |||||| |||||||||||    
T  2034915 tcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttttttcaaagtaa---gctacataatcagaaaccgttgtttctctgtatttagga 2034819  T
Q  361 ggattgtcttctgataatagttccttcattggtccatagagctttgaggatg 412  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  2034818 ggattgtcttctgataatagttcctttataggtccatagagctttgaggatg 2034767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 261 - 412
Target Start/End: Complemental strand, 2038993 - 2038845
Alignment:
Q  261 tcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttagga 360  Q
    |||||| |||||||||  ||| |||||||||||||||| ||||||| ||  ||   |||| |||| ||| |||||||| || |||||| |||||||||||    
T  2038993 tcaaatcttgtaatgtgtaagagcagaagtaccatctaatcctttttctacaa---agtacgctagatagtcagcaactgtggtttctctgtatttagga 2038897  T
Q  361 ggattgtcttctgataatagttccttcattggtccatagagctttgaggatg 412  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  2038896 ggattgtcttctgataatagatcctttattggtccatagagctttgaggatg 2038845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 238 - 412
Target Start/End: Original strand, 1948013 - 1948184
Alignment:
Q  238 ttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaa 337  Q
    |||||||| ||||| |||  ||||||||| |||||||||  ||| |||||||||||||||| ||||||||||  |||||||   ||| ||||||||||||    
T  1948013 ttttttcttccacactgcctagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctttaaagtag---gctgcataatcagcaa 1948109  T
Q  338 cagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatg 412  Q
    | || |||||| | ||||| | |||||| | ||||||||||||||||||||| ||||||||||||||||| ||||    
T  1948110 ctgtggtttctctatatttggaaggattcttttctgataatagttccttcataggtccatagagctttgacgatg 1948184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 412
Target Start/End: Complemental strand, 2030000 - 2029849
Alignment:
Q  258 agttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtattta 357  Q
    ||||||||| |||||||||  ||| |||||||||||||||| |||||||||   ||   |||||||| || |||||||||| || |||||| |||||||     
T  2030000 agttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcattaa---agtaggctgcaaaatcagcaactgtggtttctctgtatttg 2029904  T
Q  358 ggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatg 412  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  2029903 ggaggattgttttctgataatagttccttcataggtccatagagctttgacgatg 2029849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 2048261 - 2048088
Alignment:
Q  236 tgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagc 335  Q
    |||||||||| ||||||||  ||||||||||  ||||||||  ||| |||||||||||||| | |||||||  |  |||||||   | |||||| || ||    
T  2048261 tgttttttcttccacattgtccagttcaaatcctgtaatgtgtaagagcagaagtaccatccaatcctttttttacaaagtag---gttacatagtctgc 2048165  T
Q  336 aacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatg 412  Q
    ||| || |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  2048164 aactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagatg 2048088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 2035102 - 2035045
Alignment:
Q  87 ttcaataagtgaatgtttatacattgtaattcatccattggatgaaataaaaaccaca 144  Q
    |||||||||||||||||||||| || |||||||||||| | |||||||| ||||||||    
T  2035102 ttcaataagtgaatgtttatactttttaattcatccatagcatgaaatagaaaccaca 2035045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 2048404 - 2048356
Alignment:
Q  87 ttcaataagtgaatgtttatacattgtaattcatccattggatgaaata 135  Q
    ||||||| |||||||||||||| ||||||||||||||| | ||||||||    
T  2048404 ttcaataggtgaatgtttatactttgtaattcatccatagcatgaaata 2048356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 2059399 - 2059355
Alignment:
Q  91 ataagtgaatgtttatacattgtaattcatccattggatgaaata 135  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||    
T  2059399 ataagtgaatgtttatactttgtaattcatccatagcatgaaata 2059355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 2039200 - 2039142
Alignment:
Q  87 ttcaataagtgaatgtttatacattgtaattcatccattggatgaaataaaaaccacat 145  Q
    ||||| |||||||||||||| | ||||||||||||||| | |||||||| ||| |||||    
T  2039200 ttcaacaagtgaatgtttatgctttgtaattcatccatagcatgaaatagaaatcacat 2039142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 411
Target Start/End: Original strand, 48904799 - 48904963
Alignment:
Q  247 ccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgct-cgaaagtagtaggctacataatcagcaacagtagtt 345  Q
    |||||||||| |||||||||||||||||||  |||  ||||||||| | ||| || ||||||| |   || ||||| || |||| ||  |||  || |||    
T  48904799 ccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggag-agtagactgcatagtctccaattgtggtt 48904897  T
Q  346 tctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggat 411  Q
    ||| ||||||| |||||||||||||| |||||||||||||| || |||||||||||| ||||||||    
T  48904898 tctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggat 48904963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 28699396 - 28699483
Alignment:
Q  318 gtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagcttt 405  Q
    |||||||| | ||||||||||||| |||||||||||| | ||||| |||| ||||||||||| |||  | || |||||||| ||||||    
T  28699396 gtaggctataaaatcagcaacagtggtttctttgtatctgggagggttgttttctgataataattctgttataggtccataaagcttt 28699483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 28782846 - 28782908
Alignment:
Q  315 gtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataa 377  Q
    ||||||||||||||| || | || |||  ||||||||||||| ||||||||||||||||||||    
T  28782846 gtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataa 28782908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 28734895 - 28734983
Alignment:
Q  317 agtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagcttt 405  Q
    |||||||||||||||||||||  || |||||| | ||| | ||||| |||||||||||||||| |||  | || |||||||| ||||||    
T  28734895 agtaggctacataatcagcaaacgtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccataaagcttt 28734983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 28742026 - 28742116
Alignment:
Q  315 gtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagcttt 405  Q
    ||||||||||||| |||| | || ||| |||||| | ||| | ||||| |||||||||||||| | ||| || || |||||||||||||||    
T  28742026 gtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagcttt 28742116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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