View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_17 (Length: 400)
Name: NF9620_low_17
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 29936585 - 29936955
Alignment:
| Q |
18 |
attatactgtttgatttgtttgagtcattggcaacattttgttctgaccccttcatttcttgcagtctaataagctggctataggcaccattagcatcct |
117 |
Q |
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| T |
29936585 |
attatactgtttgatttatttgagtcattggcaacattttgttctgaccccttcatttcttgcagtctaattagctggctataggcaccattagcatcct |
29936684 |
T |
|
| Q |
118 |
tggtgagctcgacatgtgaacctaaccaattgaaaaatataagaatgctattatgtacaaaaacatttgggcttcatgatttctattaattttgagtcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936685 |
tggtgagctcgacatgtgaacctaaccaattgaaaaatataagaatgctattatgtacaaaaacatttgggcttcatgatttctattaattttgagtcat |
29936784 |
T |
|
| Q |
218 |
ggagaaacaggattattgtcacaaaataatgtttctacctcgttcaactatttttccttgacgaatgacagcaatggtatcaacatttctgattgtactt |
317 |
Q |
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| T |
29936785 |
ggagaaacaggattattgtcacaaaataatgtttctacctcgttcaactatttttccttgacgaatgacagcaatggtatcaacatttctgattgtactt |
29936884 |
T |
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| Q |
318 |
aagcggtgagctacgacgattgtcgtccggtttatcattattctttccaatgcctcttgtacaattctctc |
388 |
Q |
| |
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| T |
29936885 |
aagcggtgagctacgacgattgtcgtccggtttatcattattctttccaatgcctcttgtacaattctctc |
29936955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 51157583 - 51157217
Alignment:
| Q |
20 |
tatactgtttgatttgtttgagtcattggcaacattttgttctgaccccttcatttcttgcagtctaataagctggctataggcaccattagcatccttg |
119 |
Q |
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| T |
51157583 |
tatactgtttgacttgtttttatcatttgcatcattctgttctgaacccttcatttcttgcagtctaataagttggctataggctccattaggatacttt |
51157484 |
T |
|
| Q |
120 |
gtgagctcgacatgtgaacctaaccaattgaaaaatataagaatgctattatgtacaaaaacatttgggcttcatgatttctattaattttgagtcatgg |
219 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||||||||||||||| || ||| | |||||||| || ||||| ||| || ||||||| ||||||| |
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| T |
51157483 |
gtgagctcggcatgtgaacctaaccaattaaaaaatataagaatgctactaagtatattaacatttgtgcatcatgctttatac-aattttgtgtcatgg |
51157385 |
T |
|
| Q |
220 |
agaaacaggattattgtcacaaaataatgtttctacctcgttcaactatttttccttgacgaatgacagcaatggtatcaacatttctgattgtacttaa |
319 |
Q |
| |
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|||| |||| |||| |||||||||| | | |||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||| |
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| T |
51157384 |
agaagttagatt-ttgttacaaaataatctgtgtacctctttcaactatttttccatgatgaatgacagcaatggtttcaacatttcttattgtacttaa |
51157286 |
T |
|
| Q |
320 |
gcggtgagctacgacgattgtcgtccggtttatcattattctttccaatgcctcttgtacaattctctc |
388 |
Q |
| |
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| T |
51157285 |
gcggtgagctacaacgatagttgtccggtttatcattattctctccaatgcctcttgtacaattctctc |
51157217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 51146444 - 51146095
Alignment:
| Q |
20 |
tatactgtttgatttgtttgagtcattggcaacattttgttctgaccccttcatttcttgcagtctaataagctggctataggcaccattagcatccttg |
119 |
Q |
| |
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||||||||||| |||||| |||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| | ||| ||| |
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| T |
51146444 |
tatactgtttggcttgtttttgtcatttgcatcattttgctctgacctcttcatttcttgcagtctaataagctgactataggctccattgggatcattg |
51146345 |
T |
|
| Q |
120 |
gtgagctcgacatgtgaacctaaccaattgaaaaatataagaatgctattatgtacaaaaacatttgggcttcatgatttctattaattttgagtcatgg |
219 |
Q |
| |
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|||||||| ||||||||||| | |||||||||||||||||||||| || | || | |||||||||||||||||| ||| ||| |||||||| || ||| |
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| T |
51146344 |
gtgagctcagcatgtgaaccttatcaattgaaaaatataagaatgcaataaaatatataaacatttgggcttcatgctttttatgaattttgaatcgtgg |
51146245 |
T |
|
| Q |
220 |
agaaacaggattattgtcacaaaataatgtttctacctcgttcaactatttttccttgacgaatgacagcaatggtatcaacatttctgattgtacttaa |
319 |
Q |
| |
|
|| |||||| || |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| || || || || |
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| T |
51146244 |
ag-------------------aaataacgtgtctacctctttcaactatttttccttgatgaatgacagcaattgtatcaacatttcttatagtgctcaa |
51146164 |
T |
|
| Q |
320 |
gcggtgagctacgacgattgtcgtccggtttatcattattctttccaatgcctcttgtacaattctctc |
388 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
51146163 |
gcggtgtgctacaacgatagtcgtccggtttatcattattctgttcaatgcctcttgtacaattctctc |
51146095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 51200368 - 51200224
Alignment:
| Q |
20 |
tatactgtttgatttgtttgagtcattggcaacattttgttctgaccccttcatttcttgcagtctaataagctggctataggcaccattagcatccttg |
119 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||| |||||||||||| ||||||||||||| ||||||||||| |||||||| |||| || |||| | |
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| T |
51200368 |
tatactgtttgacttgtttttgtcattggtaacattctgttctgaccccctcatttcttgcagcctaataagctgcctataggctccatcaggatccctt |
51200269 |
T |
|
| Q |
120 |
gtgagctcgacatgtgaacctaaccaattgaaaaatataagaatgc |
165 |
Q |
| |
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||||||| ||||||||||| | |||||| ||||||||||||||| |
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| T |
51200268 |
gtgagctgagcatgtgaacctgatcaattg-aaaatataagaatgc |
51200224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 388
Target Start/End: Complemental strand, 51200166 - 51200031
Alignment:
| Q |
253 |
tacctcgttcaactatttttccttgacgaatgacagcaatggtatcaacatttctgattgtacttaagcggtgagctacgacgattgtcgtccggtttat |
352 |
Q |
| |
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|||||| ||||| ||||||||||||| |||| || |||||||||||| |||| | |||||||| || ||||||||||| | | || || ||||||| |
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| T |
51200166 |
tacctctttcaattatttttccttgatgaataacggcaatggtatcagcattctttattgtactcaaacggtgagctacaatcacagttgttcggtttac |
51200067 |
T |
|
| Q |
353 |
cattattctttccaatgcctcttgtacaattctctc |
388 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||| |
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| T |
51200066 |
cattactctatccaatgcctcttgtacaattctctc |
51200031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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