View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9620_low_18 (Length: 365)
Name: NF9620_low_18
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 3395450 - 3395113
Alignment:
| Q |
12 |
agagaggaggtagttagctattaaaaatgcttttgaattgttcgctattttatagagttgagacttgttttgggttcttttaacgtgtttttgttgatat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3395450 |
agagaggaggtagttagctattaaaaatgcttttgaattgttcgctattgtatagagttgagacttgttttgggttcttttaacgtgtttttgttgatat |
3395351 |
T |
|
| Q |
112 |
gctaacatatggggttaaatatattatgatttagacgaagactctttaagaccactcaatgtcataagcctaaataagttattcataagcaaattcaaat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3395350 |
gctaacatatggggttaaatatattatgatttagacgaagactctttaagaccactcaatgtcataagcctaaataagttattcataagccaattcaaat |
3395251 |
T |
|
| Q |
212 |
gtagtagcatcaatgctaataattagaaatcattctaaaattagtgattgtcataattcaagaactaaataatttcatagccaatataacttgaaaagta |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3395250 |
gtagtagcctcaatgctaataattagaaatcattctaaaattagtgattgtcataattcaagaactaaataatttcatagccaatataacttgaaaagta |
3395151 |
T |
|
| Q |
312 |
catcaaaacatcattcattacaaaagatgaataataag |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3395150 |
catcaaaacatcattcattacaaaagatgaataataag |
3395113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 3369833 - 3369496
Alignment:
| Q |
12 |
agagaggaggtagttagctattaaaaatgcttttgaattgttcgctattttatagagttgagacttgttttgggttcttttaacgtgtttttgttgatat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3369833 |
agagaggaggtagttagctattaaaaatgcttttgaattgttcgctattgtatagagttgagacttgttttgggttcttttaacgtgtttttgttgatat |
3369734 |
T |
|
| Q |
112 |
gctaacatatggggttaaatatattatgatttagacgaagactctttaagaccactcaatgtcataagcctaaataagttattcataagcaaattcaaat |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3369733 |
actaacatatggggttaaatacattatgatttagacgaagactctttaagaccactcaatgtcataagcctaaataagttattcataagccaattcaaat |
3369634 |
T |
|
| Q |
212 |
gtagtagcatcaatgctaataattagaaatcattctaaaattagtgattgtcataattcaagaactaaataatttcatagccaatataacttgaaaagta |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3369633 |
gtagtagcctcaatgctaataattagaaatcattctaaaattagtgattgtcataattcaagaactaaataatttcatagccaatataacttgaaaagta |
3369534 |
T |
|
| Q |
312 |
catcaaaacatcattcattacaaaagatgaataataag |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3369533 |
catcaaaacatcattcattacaaaagatgaataataag |
3369496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 3403683 - 3403643
Alignment:
| Q |
174 |
cataagcctaaataagttattcataagcaaattcaaatgta |
214 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
3403683 |
cataagcctaaataagctgttcataagctaattcaaatgta |
3403643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University